Mir-10-P4

MirGeneDB ID

Snu-Mir-10-P4

Family name

MIR-10 (all species)

Seed

GAAGCUC

Species

Peanut worm (Sipunculus nudus)

MiRBase ID

Paralogues

Snu-Mir-10-P1 Snu-Mir-10-P2 Snu-Mir-10-P3 Snu-Mir-10-P5

Orthologues

Aae-Mir-10-P4 Adi-Mir-10 Aga-Mir-10-P4 Asp-Mir-10 Asu-Mir-10-P4 Ava-Mir-10-P4 Bge-Mir-10-P4 Bko-Mir-10-P4o1 Bko-Mir-10-P4o2 Bpl-Mir-10-P4 Csc-Mir-10-P4q Csc-Mir-10-P4r Cte-Mir-10-P4 Dan-Mir-10-P4 Dgr-Mir-10-P4 Dlo-Mir-10-P4-v1 Dlo-Mir-10-P4-v2 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Efe-Mir-10-P4a Efe-Mir-10-P4b Efe-Mir-10-P4c Gpa-Mir-10-P4 Gsa-Mir-10-P4 Hme-Mir-10-P4 Isc-Mir-10-P4 Lan-Mir-10-P4d Lan-Mir-10-P4e Llo-Mir-10-P4-v1 Llo-Mir-10-P4-v2 Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n Nve-Mir-10 Ofu-Mir-10-P4 Pca-Mir-10-P4 Pcr-Mir-10-P4s1 Pcr-Mir-10-P4s2 Pcr-Mir-10-P4t Pdu-Mir-10-P4 Pdu-Mir-10-P4-as Tca-Mir-10-P4 Tur-Mir-10-P4u Tur-Mir-10-P4v Tur-Mir-10-P4w

Node of Origin (locus)

Protostomia

Node of Origin (family)

Eumetazoa

Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)

CM049317.1: 56712324-56712380 [+]

Precursor
(pre-Mir +30nt flank)

CACAUGCCAACAAGACCACACCCCGCAUGUACCCUGUAGACCCGGGUUUGUGUCUCCUUCUAAACAGAAGCUCGACUCUACAGGUAUUUAUCGGGUGUGUUUACAGCAUAGAAGCUC

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Structure

        10        20          30        40        50        
CACAUGCCAACAAGACCA   -    CAU-|    C      CC       G   CUCC 
                  CAC CCCG    GUACC UGUAGA  CGGGUUU UGU    U
                  GUG GGGC    UAUGG ACAUCU  GCUCGAA ACA    U
CUCGAAGAUACGACAUUU   U    UAUU^    -      CA       G   AAUC 
     110       100        90         80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Snu-Mir-10-P4_5p* (predicted)

mirBase accession

None

Sequence

0- ACCCUGUAGACCCGGGUUUGUGU -23

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Mature sequence

Snu-Mir-10-P4_3p

mirBase accession

None

Sequence

35- AGAAGCUCGACUCUACAGGUAU -57

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