MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-10-P4j

Family name MIR-10 (all species)
Seed AAGCUCG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-10-P1k-v1  Lpo-Mir-10-P1k-v2  Lpo-Mir-10-P1l-v1  Lpo-Mir-10-P1l-v2  Lpo-Mir-10-P1m-v1  Lpo-Mir-10-P1m-v2  Lpo-Mir-10-P1n-v1  Lpo-Mir-10-P1n-v2  Lpo-Mir-10-P1o-v1  Lpo-Mir-10-P1o-v2  Lpo-Mir-10-P1p-v1  Lpo-Mir-10-P1p-v2  Lpo-Mir-10-P2o  Lpo-Mir-10-P2p  Lpo-Mir-10-P2q  Lpo-Mir-10-P3o  Lpo-Mir-10-P3p  Lpo-Mir-10-P3q  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n 
Orthologues Aae-Mir-10-P4  Adi-Mir-10  Aga-Mir-10-P4  Asp-Mir-10  Asu-Mir-10-P4  Ava-Mir-10-P4  Bge-Mir-10-P4  Bpl-Mir-10-P4  Cte-Mir-10-P4  Dan-Mir-10-P4  Dgr-Mir-10-P4  Dlo-Mir-10-P4-v1  Dlo-Mir-10-P4-v2  Dma-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Gpa-Mir-10-P4  Gsa-Mir-10-P4  Hme-Mir-10-P4  Isc-Mir-10-P4  Llo-Mir-10-P4-v1  Llo-Mir-10-P4-v2  Nve-Mir-10  Ofu-Mir-10-P4  Pca-Mir-10-P4  Pdu-Mir-10-P4  Pdu-Mir-10-P4-as  Snu-Mir-10-P4  Tca-Mir-10-P4 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Eumetazoa
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013675150.1: 17257-17313 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAACGAAAACACCCAAGCCAUUCGUAAUCUACCCUGUAGAUCCGGGCUUUUGUGGCCUUUUCAGAAGCUCGUUUUUACAGGUAUCUUGCGAAUACGGCUGAUAUUCAGCAGGUGAA
Get precursor sequence
Structure
        10         20          30        40        50        
AAAACGAAAACACCCAA-   --|       UC    C      UC          UGGC 
                  GCC  AUUCGUAA  UACC UGUAGA  CGGGCUUUUG    \
                  CGG  UAAGCGUU  AUGG ACAUUU  GCUCGAAGAC    C
AAGUGGACGACUUAUAGU   CA^       CU    -      UU          UUUU 
     110       100        90         80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-10-P4j_5p*
mirBase accessionNone
Sequence 
0- UACCCUGUAGAUCCGGGCUUUUG -23
Get sequence
Mature sequence

Lpo-Mir-10-P4j_3p
mirBase accessionNone
Sequence 
34- GAAGCUCGUUUUUACAGGUAUCU -57
Get sequence