MirGeneDB 3.0
MirGeneDB ID

Isc-Mir-10-P4

Family name MIR-10 (all species)
Seed AAGCUCG
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-993
Paralogues Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Isc-Mir-10-P2  Isc-Mir-10-P3 
Orthologues Aae-Mir-10-P4  Adi-Mir-10  Aga-Mir-10-P4  Asp-Mir-10  Asu-Mir-10-P4  Ava-Mir-10-P4  Bge-Mir-10-P4  Bko-Mir-10-P4o1  Bko-Mir-10-P4o2  Bpl-Mir-10-P4  Csc-Mir-10-P4q  Csc-Mir-10-P4r  Cte-Mir-10-P4  Dan-Mir-10-P4  Dgr-Mir-10-P4  Dlo-Mir-10-P4-v1  Dlo-Mir-10-P4-v2  Dma-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Gpa-Mir-10-P4  Gsa-Mir-10-P4  Hme-Mir-10-P4  Lan-Mir-10-P4d  Lan-Mir-10-P4e  Llo-Mir-10-P4-v1  Llo-Mir-10-P4-v2  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n  Nve-Mir-10  Ofu-Mir-10-P4  Pca-Mir-10-P4  Pcr-Mir-10-P4s1  Pcr-Mir-10-P4s2  Pcr-Mir-10-P4t  Pdu-Mir-10-P4  Pdu-Mir-10-P4-as  Snu-Mir-10-P4  Tca-Mir-10-P4  Tur-Mir-10-P4u  Tur-Mir-10-P4v  Tur-Mir-10-P4w 
Node of Origin (locus) Protostomia
Node of Origin (family) Eumetazoa
Genome context
(GCF_016920785.2_ASM1692078v2_ISC)		 NW_024609835.1: 48437536-48437601 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGCACAUUUUACACGAGCCCUUCGUAAUCUACCCUGUAGAACCGGGCUUUUGUAGACUAGCGACCCUUUCAGAAGCUCGUUUCUACAGGUAUCUUGCGAAAUCAGCUGCCUGCGGCUAGAAACA
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Structure
        10        20          30        40        50        60   
GCAGCACAUUUUACACGA  CC--|      UC    C       C          UAGACUAG 
                  GC    UUCGUAA  UACC UGUAGAA CGGGCUUUUG        \
                  CG    AAGCGUU  AUGG ACAUCUU GCUCGAAGAC        C
ACAAAGAUCGGCGUCCGU  ACUA^      CU    -       U          UUUCCCAG 
    120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Sa Sa To
Star sequence

Isc-Mir-10-P4_5p*
mirBase accessionNone
Sequence 
0- CUACCCUGUAGAACCGGGCUUUUG -24
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Mature sequence

Isc-Mir-10-P4_3p
mirBase accessionMIMAT0012709
Sequence 
43- GAAGCUCGUUUCUACAGGUAUCU -66
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