MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-10-P4c

Family name MIR-10 (all species)
Seed GAAGCUC
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-10-P1  Efe-Mir-10-P2g  Efe-Mir-10-P2h  Efe-Mir-10-P2i  Efe-Mir-10-P2j  Efe-Mir-10-P2k  Efe-Mir-10-P3g  Efe-Mir-10-P3h  Efe-Mir-10-P3i  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P5a  Efe-Mir-10-P5b  Efe-Mir-10-P6  Efe-Mir-10-P7a  Efe-Mir-10-P7b 
Orthologues Aae-Mir-10-P4  Adi-Mir-10  Aga-Mir-10-P4  Asp-Mir-10  Asu-Mir-10-P4  Ava-Mir-10-P4  Bge-Mir-10-P4  Bpl-Mir-10-P4  Cte-Mir-10-P4  Dan-Mir-10-P4  Dgr-Mir-10-P4  Dlo-Mir-10-P4-v1  Dlo-Mir-10-P4-v2  Dma-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Gpa-Mir-10-P4  Gsa-Mir-10-P4  Hme-Mir-10-P4  Isc-Mir-10-P4  Llo-Mir-10-P4-v1  Llo-Mir-10-P4-v2  Nve-Mir-10  Ofu-Mir-10-P4  Pca-Mir-10-P4  Pdu-Mir-10-P4  Pdu-Mir-10-P4-as  Snu-Mir-10-P4  Tca-Mir-10-P4 
Node of Origin (locus) E. fetida
Node of Origin (family) Eumetazoa
Genome context
(Efe_combined)		 Efet.01.438967: 284-359 [-]
Precursor
(pre-Mir +30nt flank)
CUGACUGGUCGAGUGUAGGCCAACCAGCGAACUCUGUAGACGAGGGUUUUUGUGUGGACCAGCAAUGGAUCAACUCAAAAUCACAGAAGCUCCGUUCUACGGGUCUGCUGGUUGCCUCCAGCAACACGAACGACGG
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Structure
        10           20        30        40         50        60        
CUGACUGGUCGAGUGUA---|  C        A  U       -  A          GUGGACCAGCAAUG 
                    GGC AACCAGCG AC CUGUAGA CG GGGUUUUUGU              \
                    CCG UUGGUCGU UG GGCAUCU GC CUCGAAGACA              G
GGCAGCAAGCACAACGACCU^  -        C  -       U  -          CUAAAACUCAACUA 
    130       120        110        100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Efe-Mir-10-P4c_5p*
mirBase accessionNone
Sequence 
0- ACUCUGUAGACGAGGGUUUUUGU -23
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Mature sequence

Efe-Mir-10-P4c_3p
mirBase accessionNone
Sequence 
54- AGAAGCUCCGUUCUACGGGUCU -76
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