MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-10-P4

Family name MIR-10 (all species)
Seed UCUGUAU
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-993
Paralogues Gsa-Mir-10-P1o6  Gsa-Mir-10-P1o7  Gsa-Mir-10-P3 
Orthologues Aae-Mir-10-P4  Adi-Mir-10  Aga-Mir-10-P4  Asp-Mir-10  Asu-Mir-10-P4  Ava-Mir-10-P4  Bge-Mir-10-P4  Bko-Mir-10-P4-o2  Bpl-Mir-10-P4  Csc-Mir-10-P4q  Csc-Mir-10-P4r  Cte-Mir-10-P4  Dan-Mir-10-P4  Dgr-Mir-10-P4  Dlo-Mir-10-P4-v1  Dlo-Mir-10-P4-v2  Dma-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Gpa-Mir-10-P4  Hme-Mir-10-P4  Isc-Mir-10-P4  Lan-Mir-10-P4d  Lan-Mir-10-P4e  Llo-Mir-10-P4-v1  Llo-Mir-10-P4-v2  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n  Nve-Mir-10  Ofu-Mir-10-P4  Pca-Mir-10-P4  Pcr-Mir-10-P4s1  Pcr-Mir-10-P4s2  Pcr-Mir-10-P4t  Pdu-Mir-10-P4  Pdu-Mir-10-P4-as  Snu-Mir-10-P4  Tca-Mir-10-P4  Tur-Mir-10-P4u  Tur-Mir-10-P4v  Tur-Mir-10-P4w 
Node of Origin (locus) Protostomia
Node of Origin (family) Eumetazoa
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006950686: 1088-1147 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUAAGUGAGUCUUUGUUCUUAUCGAAUGAUCUGUAUUCUUGAGCUUGUGGUUGUUUAAUUUAAACUAGAAGCUCGAGCAUACAGGUUCUUCGAAAGUACCCAGCACCAUCUAGUUAAU
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Structure
        10           20        30        40        50         
AAUUAAGUGAGUCUUUGUU---|  A     U         U         G   UUGUUU 
                      CUU UCGAA GAUCUGUAU CUUGAGCUU UGG      A
                      GAA AGCUU UUGGACAUA GAGCUCGAA AUC      A
UAAUUGAUCUACCACGACCCAU^  -     C         C         G   AAAUUU 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Gs
Mature sequence

Gsa-Mir-10-P4_5p
mirBase accessionMIMAT0035304
Sequence 
0- AUCUGUAUUCUUGAGCUUGUGG -22
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Co-mature sequence

Gsa-Mir-10-P4_3p
mirBase accessionMIMAT0035305
Sequence 
38- AGAAGCUCGAGCAUACAGGUUC -60
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