Mir-10-P1o7

MirGeneDB ID

Gsa-Mir-10-P1o7

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Russian doll killer (Gyrodactylus salaris)

MiRBase ID

gsa-mir-10b

Paralogues

Gsa-Mir-10-P1o6 Gsa-Mir-10-P3 Gsa-Mir-10-P4

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Efe-Mir-10-P1 Egr-Mir-10-P1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hru-Mir-10-P1 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1o-v2 Mgi-Mir-10-P1 Mom-Mir-10-P1 Npo-Mir-10-P1 Nve-Mir-10 Ofu-Mir-10-P1 Pau-Mir-10-P1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 War-Mir-10-P1 Xbo-Mir-10-P1

Node of Origin (locus)

G. salaris

Node of Origin (family)

Eumetazoa

Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)

scf7180006950194: 9064-9123 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CACAAAACCAAAGAAUUAUCCAAUCAAUUAAACCCUGUAGACCCGAAUUUGAUGAUGAAAAUGAAAUCAAAAUCGAGCUUACAAGGUAUACAUUGUUGGACUAUUAAUCAAGUUUAUUGA

Get precursor sequence

Structure

        10          20         30        40        50         
CACAAAACCAAAGAAUUA--|    U    -  A   C     ACC   A     UGAUGA 
                    UCCAA CAAU UA ACC UGUAG   CGA UUUGA      A
                    AGGUU GUUA AU UGG ACAUU   GCU AAACU      A
AGUUAUUUGAACUAAUUAUC^    -    C  A   A     CGA   A     AAAGUA 
.       110       100         90        80        70        60