MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-10-P1o6

Family name MIR-10 (all species)
Seed AAUUCGA
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-10a
Paralogues Gsa-Mir-10-P1o7  Gsa-Mir-10-P3  Gsa-Mir-10-P4 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Adi-Mir-10  Aga-Mir-10-P1-v1  Aga-Mir-10-P1-v2  Agr-Mir-10-P1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dlo-Mir-10-P1-v2  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Lpo-Mir-10-P1o-v1  Lpo-Mir-10-P1o-v2  Mgi-Mir-10-P1  Mom-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  War-Mir-10-P1  Xbo-Mir-10-P1 
Node of Origin (locus) G. salaris
Node of Origin (family) Eumetazoa
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006950305: 2713-2769 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUCCUCAUAUCAUAGAGAAUGGAUUGAAGACGCUGUAGGAUCGAAUGUUACCUUAAAUAAAGUAAAUUCGAGUCAACAGGGUCGUCAAAUACUCUCUGAACGACAUUGGACCUCU
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Structure
        10           20        30        40        50        
UGAUCCUCAUAUCAUAG---|  A  GA    A   G    A GA      G    CUUA 
                    AGA UG  UUGA GAC CUGU G  UCGAAU UUAC    A
                    UCU AU  AACU CUG GACA C  AGCUUA AAUG    A
UCUCCAGGUUACAGCAAGUC^  C  A-    G   G    A UG      -    AAAU 
     110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gsa-Mir-10-P1o6_5p*
mirBase accessionMIMAT0035278
Sequence 
0- GACGCUGUAGGAUCGAAUGUUAC -23
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Mature sequence

Gsa-Mir-10-P1o6_3p
mirBase accessionMIMAT0035279
Sequence 
35- AAAUUCGAGUCAACAGGGUCGU -57
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