MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-10-P1

Family name

MIR-10 (all species)

Seed

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Rph-Mir-10-P2 Rph-Mir-10-P3 Rph-Mir-10-P5 Rph-Mir-10-P6

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1b-v1 Aca-Mir-10-P1b-v2 Aca-Mir-10-P1c-v1 Aca-Mir-10-P1c-v2 Aca-Mir-10-P1d-v1 Aca-Mir-10-P1d-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Ami-Mir-10-P1b-v1 Ami-Mir-10-P1b-v2 Ami-Mir-10-P1c-v1 Ami-Mir-10-P1c-v2 Ami-Mir-10-P1d-v1 Ami-Mir-10-P1d-v2 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Bta-Mir-10-P1b-v1 Bta-Mir-10-P1b-v2 Bta-Mir-10-P1c-v1 Bta-Mir-10-P1c-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cfa-Mir-10-P1b-v2 Cfa-Mir-10-P1c-v1 Cfa-Mir-10-P1c-v2 Cja-Mir-10-P1b-v1 Cja-Mir-10-P1b-v2 Cja-Mir-10-P1c-v1 Cja-Mir-10-P1c-v2 Cli-Mir-10-P1b-v1 Cli-Mir-10-P1b-v2 Cli-Mir-10-P1c-v1 Cli-Mir-10-P1c-v2 Cli-Mir-10-P1d-v1 Cli-Mir-10-P1d-v2 Cmi-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v2 Cmi-Mir-10-P1c-v1 Cmi-Mir-10-P1c-v2 Cmi-Mir-10-P1d-v1 Cmi-Mir-10-P1d-v2 Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v2 Cpi-Mir-10-P1c-v1 Cpi-Mir-10-P1c-v2 Cpi-Mir-10-P1d-v1 Cpi-Mir-10-P1d-v2 Cpo-Mir-10-P1b-v1 Cpo-Mir-10-P1b-v2 Cpo-Mir-10-P1c-v1 Cpo-Mir-10-P1c-v2 Csc-Mir-10-P1q1-v1 Csc-Mir-10-P1q1-v2 Csc-Mir-10-P1q2-v1 Csc-Mir-10-P1q2-v2 Csc-Mir-10-P1q3-v1 Csc-Mir-10-P1q3-v2 Csc-Mir-10-P1r Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dno-Mir-10-P1b-v2 Dno-Mir-10-P1c-v1 Dno-Mir-10-P1c-v2 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b1-v2 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1b2-v2 Dre-Mir-10-P1c1-v1 Dre-Mir-10-P1c1-v2 Dre-Mir-10-P1c2-v1 Dre-Mir-10-P1c2-v2 Dre-Mir-10-P1d1-v1 Dre-Mir-10-P1d1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Ebu-Mir-10-P1e Ebu-Mir-10-P1f Eca-Mir-10-P1b-v1 Eca-Mir-10-P1b-v2 Eca-Mir-10-P1c-v1 Eca-Mir-10-P1c-v2 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1b-v1 Ete-Mir-10-P1b-v2 Ete-Mir-10-P1c-v1 Ete-Mir-10-P1c-v2 Gga-Mir-10-P1b-v1 Gga-Mir-10-P1b-v2 Gga-Mir-10-P1c-v1 Gga-Mir-10-P1c-v2 Gga-Mir-10-P1d-v1 Gga-Mir-10-P1d-v2 Gja-Mir-10-P1b-v1 Gja-Mir-10-P1b-v2 Gja-Mir-10-P1c-v1 Gja-Mir-10-P1c-v2 Gja-Mir-10-P1d-v1 Gja-Mir-10-P1d-v2 Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b1-v2 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1b2-v2 Gmo-Mir-10-P1c1-v1 Gmo-Mir-10-P1c1-v2 Gmo-Mir-10-P1c2-v1 Gmo-Mir-10-P1c2-v2 Gmo-Mir-10-P1d1-v1 Gmo-Mir-10-P1d1-v2 Gpa-Mir-10-P1 Gsa-Mir-10-P1o6 Gsa-Mir-10-P1o7 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hmi-Mir-10-P1a Hmi-Mir-10-P1b Hru-Mir-10-P1 Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Hsa-Mir-10-P1c-v1 Hsa-Mir-10-P1c-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Laf-Mir-10-P1b Laf-Mir-10-P1c-v1 Laf-Mir-10-P1c-v2 Lan-Mir-10-P1u Lan-Mir-10-P1v Lch-Mir-10-P1b Lch-Mir-10-P1c Lch-Mir-10-P1d Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1b-v1 Loc-Mir-10-P1b-v2 Loc-Mir-10-P1c-v1 Loc-Mir-10-P1c-v2 Loc-Mir-10-P1d-v1 Loc-Mir-10-P1d-v2 Lpo-Mir-10-P1k-v1 Lpo-Mir-10-P1k-v2 Lpo-Mir-10-P1l-v1 Lpo-Mir-10-P1l-v2 Lpo-Mir-10-P1m-v1 Lpo-Mir-10-P1m-v2 Lpo-Mir-10-P1n-v1 Lpo-Mir-10-P1n-v2 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1o-v2 Lpo-Mir-10-P1p-v1 Lpo-Mir-10-P1p-v2 Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b1-v2 Mal-Mir-10-P1b2 Mal-Mir-10-P1c1-v1 Mal-Mir-10-P1c1-v2 Mal-Mir-10-P1c2a-v1 Mal-Mir-10-P1c2a-v2 Mal-Mir-10-P1c2b-v1 Mal-Mir-10-P1c2b-v2 Mal-Mir-10-P1d1-v1 Mal-Mir-10-P1d1-v2 Mdo-Mir-10-P1b-v1 Mdo-Mir-10-P1b-v2 Mdo-Mir-10-P1c-v1 Mdo-Mir-10-P1c-v2 Mgi-Mir-10-P1 Mml-Mir-10-P1b-v1 Mml-Mir-10-P1b-v2 Mml-Mir-10-P1c-v1 Mml-Mir-10-P1c-v2 Mmr-Mir-10-P1b-v1 Mmr-Mir-10-P1b-v2 Mmr-Mir-10-P1c-v1 Mmr-Mir-10-P1c-v2 Mmu-Mir-10-P1b-v1 Mmu-Mir-10-P1b-v2 Mmu-Mir-10-P1c-v1 Mmu-Mir-10-P1c-v2 Mom-Mir-10-P1 Mun-Mir-10-P1b-v1 Mun-Mir-10-P1b-v2 Mun-Mir-10-P1c-v1 Mun-Mir-10-P1c-v2 Mun-Mir-10-P1d-v1 Mun-Mir-10-P1d-v2 Neu-Mir-10-P1b-v1 Neu-Mir-10-P1b-v2 Neu-Mir-10-P1c-v1 Neu-Mir-10-P1c-v2 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Oan-Mir-10-P1b-v2 Oan-Mir-10-P1c-v1 Oan-Mir-10-P1c-v2 Ocu-Mir-10-P1b-v1 Ocu-Mir-10-P1b-v2 Ocu-Mir-10-P1c-v1 Ocu-Mir-10-P1c-v2 Ofu-Mir-10-P1 Pab-Mir-10-P1b-v1 Pab-Mir-10-P1b-v2 Pab-Mir-10-P1c-v1 Pab-Mir-10-P1c-v2 Pau-Mir-10-P1 Pbv-Mir-10-P1b-v1 Pbv-Mir-10-P1b-v2 Pbv-Mir-10-P1c-v1 Pbv-Mir-10-P1c-v2 Pbv-Mir-10-P1d-v1 Pbv-Mir-10-P1d-v2 Pca-Mir-10-P1 Pcr-Mir-10-P1o4-v1 Pcr-Mir-10-P1o4-v2 Pcr-Mir-10-P1o5 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pma-Mir-10-P1o1 Pma-Mir-10-P1o2 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1b-v1 Rno-Mir-10-P1b-v2 Rno-Mir-10-P1c-v1 Rno-Mir-10-P1c-v2 Sha-Mir-10-P1b-v1 Sha-Mir-10-P1b-v2 Sha-Mir-10-P1c-v1 Sha-Mir-10-P1c-v2 Sko-Mir-10-P1 Sma-Mir-10-P1 Sme-Mir-10-P1s Sme-Mir-10-P1t Snu-Mir-10-P1 Spt-Mir-10-P1b Spt-Mir-10-P1c Spu-Mir-10-P1 Sro-Mir-10-P1w Sro-Mir-10-P1x Sto-Mir-10-P1b-v1 Sto-Mir-10-P1b-v2 Sto-Mir-10-P1c-v1 Sto-Mir-10-P1c-v2 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tgu-Mir-10-P1b-v1 Tgu-Mir-10-P1b-v2 Tgu-Mir-10-P1c-v1 Tgu-Mir-10-P1c-v2 Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b1-v2 Tni-Mir-10-P1b2 Tni-Mir-10-P1c1-v1 Tni-Mir-10-P1c1-v2 Tni-Mir-10-P1c2-v1 Tni-Mir-10-P1c2-v2 Tni-Mir-10-P1d1-v1 Tni-Mir-10-P1d1-v2 Tur-Mir-10-P1y Tur-Mir-10-P1z-v1 Tur-Mir-10-P1z-v2 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b3-v2 Xla-Mir-10-P1b4-v1 Xla-Mir-10-P1b4-v2 Xla-Mir-10-P1c3-v1 Xla-Mir-10-P1c3-v2 Xla-Mir-10-P1c4-v1 Xla-Mir-10-P1c4-v2 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d3-v2 Xla-Mir-10-P1d4-v1 Xla-Mir-10-P1d4-v2 Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1b-v2 Xtr-Mir-10-P1c-v1 Xtr-Mir-10-P1c-v2 Xtr-Mir-10-P1d-v1 Xtr-Mir-10-P1d-v2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Eumetazoa

Genome context
(Ruditapes_GCA_009026015)

CM018531.1: 24403455-24403513 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UGGAUACUUAGAGGAUCGGUGACCGGCACAUACCCUGUAGAUCCGAAUUUGUGUAAUAUCAUGCUACAAAUUCGGUUUUGCGGGAUUUCUGCGGCACUAAAUUCGUCAAGUUUCAUGAA

Get precursor sequence

Structure

        10            20        30        40        50         
UGGAUACUUAGAGGAUC----|   A   G  CAUAC        U          GUAAUA 
                     GGUG CCG CA     CCUGUAGA CCGAAUUUGU      \
                     UCAC GGC GU     GGGCGUUU GGCUUAAACA      U
AAGUACUUUGAACUGCUUAAA^   -   -  CUUUA        U          UCGUAC 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

No

Motifs

No

Tissue expression

-

+

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Mature sequence

Rph-Mir-10-P1_5p

mirBase accession

None

Sequence

0- UACCCUGUAGAUCCGAAUUUGU -22

Get sequence

Star sequence

Rph-Mir-10-P1_3p*

mirBase accession

None

Sequence

37- AAAUUCGGUUUUGCGGGAUUUC -59

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