Mir-10-P1b-v2

MirGeneDB ID

Bta-Mir-10-P1b-v2

Family name

MIR-10 (all species)

Seed

CCCUGUA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-10b

Paralogues

Bta-Mir-10-P1b-v1 Bta-Mir-10-P1c-v1 Bta-Mir-10-P1c-v2 Bta-Mir-10-P2b Bta-Mir-10-P2c Bta-Mir-10-P2d Bta-Mir-10-P3b Bta-Mir-10-P3c Bta-Mir-10-P3d

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1b-v1 Aca-Mir-10-P1b-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Ami-Mir-10-P1b-v1 Ami-Mir-10-P1b-v2 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cfa-Mir-10-P1b-v2 Cja-Mir-10-P1b-v1 Cja-Mir-10-P1b-v2 Cli-Mir-10-P1b-v1 Cli-Mir-10-P1b-v2 Cmi-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v2 Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v2 Cpo-Mir-10-P1b-v1 Cpo-Mir-10-P1b-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dno-Mir-10-P1b-v2 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b1-v2 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1b2-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1b-v1 Eca-Mir-10-P1b-v2 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1b-v1 Ete-Mir-10-P1b-v2 Gga-Mir-10-P1b-v1 Gga-Mir-10-P1b-v2 Gja-Mir-10-P1b-v1 Gja-Mir-10-P1b-v2 Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b1-v2 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1b2-v2 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hmi-Mir-10-P1b Hru-Mir-10-P1 Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Laf-Mir-10-P1b Lch-Mir-10-P1b Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1b-v1 Loc-Mir-10-P1b-v2 Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b1-v2 Mal-Mir-10-P1b2 Mdo-Mir-10-P1b-v1 Mdo-Mir-10-P1b-v2 Mgi-Mir-10-P1 Mml-Mir-10-P1b-v1 Mml-Mir-10-P1b-v2 Mmr-Mir-10-P1b-v1 Mmr-Mir-10-P1b-v2 Mmu-Mir-10-P1b-v1 Mmu-Mir-10-P1b-v2 Mom-Mir-10-P1 Mun-Mir-10-P1b-v1 Mun-Mir-10-P1b-v2 Neu-Mir-10-P1b-v1 Neu-Mir-10-P1b-v2 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Oan-Mir-10-P1b-v2 Ocu-Mir-10-P1b-v1 Ocu-Mir-10-P1b-v2 Ofu-Mir-10-P1 Pab-Mir-10-P1b-v1 Pab-Mir-10-P1b-v2 Pau-Mir-10-P1 Pbv-Mir-10-P1b-v1 Pbv-Mir-10-P1b-v2 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1b-v1 Rno-Mir-10-P1b-v2 Rph-Mir-10-P1 Sha-Mir-10-P1b-v1 Sha-Mir-10-P1b-v2 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1b Spu-Mir-10-P1 Sto-Mir-10-P1b-v1 Sto-Mir-10-P1b-v2 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tgu-Mir-10-P1b-v1 Tgu-Mir-10-P1b-v2 Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b1-v2 Tni-Mir-10-P1b2 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b3-v2 Xla-Mir-10-P1b4-v1 Xla-Mir-10-P1b4-v2 Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1b-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037329.1: 20762762-20762821 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1b-v2)

Mir-10-P1b-v1 NC_037329.1: 20762761-20762822 [-] UCSC Ensembl
Mir-10-P1b-v2 NC_037329.1: 20762762-20762821 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AACCUGGAGGCAGUGACGUUGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGGUAUCCAUGUAGUCACAGAUUCGAUUCUAGGGGAAUAUAUGGUCGAUGCAAAAACUUCACAUUCUC

Get precursor sequence

Structure

        10          20        30        40        50          
AACCUGGAGGCAGUGAC--|   U        A    G     C          UGGUAUC 
                   GUUG CUAUAUAU CCCU UAGAA CGAAUUUGUG       \
                   UAGC GGUAUAUA GGGG AUCUU GCUUAGACAC       C
CUCUUACACUUCAAAAACG^   U        A    -     A          UGAUGUA 
.       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-10-P1b-v2_5p

mirBase accession

MIMAT0003839

Sequence

0- ACCCUGUAGAACCGAAUUUGUG -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-10b

Star sequence

Bta-Mir-10-P1b-v2_3p*

mirBase accession

None

Sequence

39- CAGAUUCGAUUCUAGGGGAAU -60

Get sequence