Mir-10-P1b1-v2

MirGeneDB ID

Dre-Mir-10-P1b1-v2

Family name

MIR-10 (all species)

Seed

CCCUGUA

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-10b-1

Paralogues

Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1b2-v2 Dre-Mir-10-P1c1-v1 Dre-Mir-10-P1c1-v2 Dre-Mir-10-P1c2-v1 Dre-Mir-10-P1c2-v2 Dre-Mir-10-P1d1-v1 Dre-Mir-10-P1d1-v2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dre-Mir-10-P3c1 Dre-Mir-10-P3c2 Dre-Mir-10-P3d1 Dre-Mir-10-P3d2

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1b-v1 Aca-Mir-10-P1b-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Ami-Mir-10-P1b-v1 Ami-Mir-10-P1b-v2 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Bta-Mir-10-P1b-v1 Bta-Mir-10-P1b-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cfa-Mir-10-P1b-v2 Cja-Mir-10-P1b-v1 Cja-Mir-10-P1b-v2 Cli-Mir-10-P1b-v1 Cli-Mir-10-P1b-v2 Cmi-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v2 Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v2 Cpo-Mir-10-P1b-v1 Cpo-Mir-10-P1b-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dno-Mir-10-P1b-v2 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1b-v1 Eca-Mir-10-P1b-v2 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1b-v1 Ete-Mir-10-P1b-v2 Gga-Mir-10-P1b-v1 Gga-Mir-10-P1b-v2 Gja-Mir-10-P1b-v1 Gja-Mir-10-P1b-v2 Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b1-v2 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hmi-Mir-10-P1b Hru-Mir-10-P1 Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Laf-Mir-10-P1b Lch-Mir-10-P1b Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1b-v1 Loc-Mir-10-P1b-v2 Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b1-v2 Mdo-Mir-10-P1b-v1 Mdo-Mir-10-P1b-v2 Mgi-Mir-10-P1 Mml-Mir-10-P1b-v1 Mml-Mir-10-P1b-v2 Mmr-Mir-10-P1b-v1 Mmr-Mir-10-P1b-v2 Mmu-Mir-10-P1b-v1 Mmu-Mir-10-P1b-v2 Mom-Mir-10-P1 Mun-Mir-10-P1b-v1 Mun-Mir-10-P1b-v2 Neu-Mir-10-P1b-v1 Neu-Mir-10-P1b-v2 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Oan-Mir-10-P1b-v2 Ocu-Mir-10-P1b-v1 Ocu-Mir-10-P1b-v2 Ofu-Mir-10-P1 Pab-Mir-10-P1b-v1 Pab-Mir-10-P1b-v2 Pau-Mir-10-P1 Pbv-Mir-10-P1b-v1 Pbv-Mir-10-P1b-v2 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1b-v1 Rno-Mir-10-P1b-v2 Rph-Mir-10-P1 Sha-Mir-10-P1b-v1 Sha-Mir-10-P1b-v2 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1b Spu-Mir-10-P1 Sto-Mir-10-P1b-v1 Sto-Mir-10-P1b-v2 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tgu-Mir-10-P1b-v1 Tgu-Mir-10-P1b-v2 Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b1-v2 War-Mir-10-P1 Xbo-Mir-10-P1 Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1b-v2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(danRer11)

chr9: 1952964-1953023 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1b1-v2)

Mir-10-P1b1-v1 chr9: 1952963-1953024 [-] UCSC Ensembl
Mir-10-P1b1-v2 chr9: 1952964-1953023 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUUGGUGAAUAUAUGCCGUCGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGAAAAAAUAACAUUCACAGAUUCGAUUCUAGGGGAGUAUAUGGUCGAUGCAAUAACUUCGAAAAACA

Get precursor sequence

Structure

        10          20        30        40        50          
GUUGGUGAAUAUAUGCC--|   U        A    G     C          UGAAAAA 
                   GUCG CUAUAUAU CCCU UAGAA CGAAUUUGUG       \
                   UAGC GGUAUAUG GGGG AUCUU GCUUAGACAC       A
ACAAAAAGCUUCAAUAACG^   U        A    -     A          UUACAAU 
.       110       100        90         80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-10-P1b1-v2_5p

mirBase accession

MIMAT0001268

Sequence

0- ACCCUGUAGAACCGAAUUUGUG -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-10b

Star sequence

Dre-Mir-10-P1b1-v2_3p*

mirBase accession

MIMAT0031919

Sequence

39- CAGAUUCGAUUCUAGGGGAGU -60

Get sequence