Mir-10-P1d1-v1

MirGeneDB ID

Dre-Mir-10-P1d1-v1

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-10b-2

Paralogues

Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b1-v2 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1b2-v2 Dre-Mir-10-P1c1-v1 Dre-Mir-10-P1c1-v2 Dre-Mir-10-P1c2-v1 Dre-Mir-10-P1c2-v2 Dre-Mir-10-P1d1-v2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dre-Mir-10-P3c1 Dre-Mir-10-P3c2 Dre-Mir-10-P3d1 Dre-Mir-10-P3d2

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1d-v1 Aca-Mir-10-P1d-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Ami-Mir-10-P1d-v1 Ami-Mir-10-P1d-v2 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cli-Mir-10-P1d-v1 Cli-Mir-10-P1d-v2 Cmi-Mir-10-P1d-v1 Cmi-Mir-10-P1d-v2 Cpi-Mir-10-P1d-v1 Cpi-Mir-10-P1d-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Efe-Mir-10-P1 Egr-Mir-10-P1 Gga-Mir-10-P1d-v1 Gga-Mir-10-P1d-v2 Gja-Mir-10-P1d-v1 Gja-Mir-10-P1d-v2 Gmo-Mir-10-P1d1-v1 Gmo-Mir-10-P1d1-v2 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hru-Mir-10-P1 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lch-Mir-10-P1d Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1d-v1 Loc-Mir-10-P1d-v2 Mal-Mir-10-P1d1-v1 Mal-Mir-10-P1d1-v2 Mgi-Mir-10-P1 Mom-Mir-10-P1 Mun-Mir-10-P1d-v1 Mun-Mir-10-P1d-v2 Npo-Mir-10-P1 Nve-Mir-10 Ofu-Mir-10-P1 Pau-Mir-10-P1 Pbv-Mir-10-P1d-v1 Pbv-Mir-10-P1d-v2 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tni-Mir-10-P1d1-v1 Tni-Mir-10-P1d1-v2 War-Mir-10-P1 Xbo-Mir-10-P1 Xtr-Mir-10-P1d-v1 Xtr-Mir-10-P1d-v2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(danRer11)

chr23: 36130016-36130078 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1d1-v1)

Mir-196-P4a chr23: 36088111-36088169 [+] UCSC Ensembl
Mir-10-P1d1-v1 chr23: 36130016-36130078 [+] UCSC Ensembl
Mir-10-P1d1-v2 chr23: 36130017-36130077 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGAAGGGCCUGUCAGUAGUCGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUCCAAAACAUCAAAAUCGCAAAUACGUCUCUACAGGAAUACAUGGGCGACGUAAAAGCCACGAACGCCAA

Get precursor sequence

Structure

        10          20        30        40        50        60 
AAGAAGGGCCUGUCAGUA--|        A   AC        AC  A       UCCAAAA 
                    GUCGUCUAU UGU  CCUGUAGA  CG AUUUGUG       C
                    CAGCGGGUA AUA  GGACAUCU  GC UAAACGC       A
AACCGCAAGCACCGAAAAUG^        C   A-        CU  A       UAAAACU 
 120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-10-P1d1-v1_5p

mirBase accession

MIMAT0001268

Sequence

0- UACCCUGUAGAACCGAAUUUGUG -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-10b

Star sequence

Dre-Mir-10-P1d1-v1_3p*

mirBase accession

MIMAT0031934

Sequence

41- CAAAUACGUCUCUACAGGAAUA -63

Get sequence