Mir-10-P3c1

MirGeneDB ID

Dre-Mir-10-P3c1

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-125c

Paralogues

Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b1-v2 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1b2-v2 Dre-Mir-10-P1c1-v1 Dre-Mir-10-P1c1-v2 Dre-Mir-10-P1c2-v1 Dre-Mir-10-P1c2-v2 Dre-Mir-10-P1d1-v1 Dre-Mir-10-P1d1-v2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dre-Mir-10-P3c2 Dre-Mir-10-P3d1 Dre-Mir-10-P3d2

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3c Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3c Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3c Cfa-Mir-10-P3c Cin-Mir-10-P3 Cja-Mir-10-P3c Cli-Mir-10-P3c Cpi-Mir-10-P3c Cpo-Mir-10-P3c Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3c Dpu-Mir-10-P3 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3c Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3c Gga-Mir-10-P3c Gja-Mir-10-P3c Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3c Isc-Mir-10-P3 Laf-Mir-10-P3c Lan-Mir-10-P3 Lch-Mir-10-P3c Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3c Mdo-Mir-10-P3c Mgi-Mir-10-P3 Mml-Mir-10-P3c Mmr-Mir-10-P3c Mmu-Mir-10-P3c Mom-Mir-10-P3 Mun-Mir-10-P3c Nag-Mir-10-P3-v1 Nag-Mir-10-P3-v2 Neu-Mir-10-P3c Nve-Mir-10 Oan-Mir-10-P3c Obi-Mir-10-P3 Ocu-Mir-10-P3c Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3c Pau-Mir-10-P3 Pbv-Mir-10-P3c Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3c Rph-Mir-10-P3 Sha-Mir-10-P3c Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3c Spu-Mir-10-P3 Sto-Mir-10-P3c Tca-Mir-10-P3 Tgu-Mir-10-P3c War-Mir-10-P3 Xbo-Mir-10-P3 Xtr-Mir-10-P3c

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(danRer11)

chr15: 29800981-29801041 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3c1)

Mir-10-P2c1 chr15: 29795596-29795654 [+] UCSC Ensembl
Let-7-P1c1 chr15: 29795845-29795911 [+] UCSC Ensembl
Mir-10-P3c1 chr15: 29800981-29801041 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCAGUUGGUUAUGGCUGCUCUCCUCCUGUUCCCUGAGACCCUAACUCGUGAGGUCUUUUUCCAAAAUCACGGGUCAGGAGCUUGGGAGACAGGUGGAGGGCUUCAGCAGCUUUGAUCAAA

Get precursor sequence

Structure

        10          20        30        40        50          
CUCAGUUGGUUAUGGCU--|      U     UC  UG  AC   A        GGUCUUU 
                   GCUCUCC CCUGU  CC  AG  CCU ACUCGUGA       \
                   CGGGAGG GGACA  GG  UC  GGA UGGGCACU       U
AAACUAGUUUCGACGACUU^      U     GA  GU  GA   C        AAAACCU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-10-P3c1_5p

mirBase accession

MIMAT0001822

Sequence

0- UCCCUGAGACCCUAACUCGUGA -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-125c

Star sequence

Dre-Mir-10-P3c1_3p*

mirBase accession

MIMAT0031966

Sequence

39- ACGGGUCAGGAGCUUGGGAGAC -61

Get sequence