MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-10-P3

Family name MIR-10 (all species)
Seed CCCUGAG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-125a
Paralogues Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bfl-Mir-10-P9  Bfl-Mir-10-P10 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Aca-Mir-10-P3c  Aca-Mir-10-P3d  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Ami-Mir-10-P3b  Ami-Mir-10-P3c  Ami-Mir-10-P3d  Asp-Mir-10  Asu-Mir-10-P3  Ava-Mir-10-P3v  Ava-Mir-10-P3w  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Bta-Mir-10-P3c  Bta-Mir-10-P3d  Cbr-Mir-10-P3m  Cbr-Mir-10-P3n  Cel-Mir-10-P3m  Cel-Mir-10-P3n  Cfa-Mir-10-P3b  Cfa-Mir-10-P3c  Cfa-Mir-10-P3d  Cin-Mir-10-P3  Cja-Mir-10-P3b  Cja-Mir-10-P3c  Cja-Mir-10-P3d  Cli-Mir-10-P3c  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3b  Cpi-Mir-10-P3c  Cpi-Mir-10-P3d  Cpo-Mir-10-P3b  Cpo-Mir-10-P3c  Cpo-Mir-10-P3d  Csc-Mir-10-P3r1  Csc-Mir-10-P3r2  Cte-Mir-10-P3  Dan-Mir-10-P3  Dgr-Mir-10-P3w  Dgr-Mir-10-P3x  Dgr-Mir-10-P3y  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3c  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Ebu-Mir-10-P3e  Ebu-Mir-10-P3f  Eca-Mir-10-P3b  Eca-Mir-10-P3c  Eca-Mir-10-P3d  Efe-Mir-10-P3g  Efe-Mir-10-P3h  Efe-Mir-10-P3i  Egr-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Ete-Mir-10-P3c  Ete-Mir-10-P3d  Gga-Mir-10-P3c  Gga-Mir-10-P3d  Gja-Mir-10-P3b  Gja-Mir-10-P3c  Gja-Mir-10-P3d  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Gmo-Mir-10-P3c2  Gmo-Mir-10-P3d1  Gmo-Mir-10-P3d2  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Hsa-Mir-10-P3b  Hsa-Mir-10-P3c  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Laf-Mir-10-P3b  Laf-Mir-10-P3c  Laf-Mir-10-P3d  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lch-Mir-10-P3c  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Loc-Mir-10-P3b  Loc-Mir-10-P3c  Loc-Mir-10-P3d  Lpo-Mir-10-P3o  Lpo-Mir-10-P3p  Lpo-Mir-10-P3q  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mal-Mir-10-P3c2  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2  Mdo-Mir-10-P3c  Mdo-Mir-10-P3d  Mgi-Mir-10-P3  Mml-Mir-10-P3b  Mml-Mir-10-P3c  Mml-Mir-10-P3d  Mmr-Mir-10-P3b  Mmr-Mir-10-P3c  Mmr-Mir-10-P3d  Mmu-Mir-10-P3b  Mmu-Mir-10-P3c  Mmu-Mir-10-P3d  Mom-Mir-10-P3  Mun-Mir-10-P3b  Mun-Mir-10-P3c  Mun-Mir-10-P3d  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Neu-Mir-10-P3c  Neu-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3b  Oan-Mir-10-P3c  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ocu-Mir-10-P3c  Ocu-Mir-10-P3d  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pab-Mir-10-P3b  Pab-Mir-10-P3c  Pab-Mir-10-P3d  Pau-Mir-10-P3  Pbv-Mir-10-P3b  Pbv-Mir-10-P3c  Pbv-Mir-10-P3d  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Pfl-Mir-10-P3j1  Pfl-Mir-10-P3j2  Pfl-Mir-10-P3k  Ple-Mir-10-P3  Pma-Mir-10-P3o1  Pma-Mir-10-P3o2  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rno-Mir-10-P3b  Rno-Mir-10-P3c  Rno-Mir-10-P3d  Rph-Mir-10-P3  Sha-Mir-10-P3b  Sha-Mir-10-P3c  Sha-Mir-10-P3d  Sko-Mir-10-P3  Sma-Mir-10-P3o3  Sma-Mir-10-P3o4  Sma-Mir-10-P3o5  Sme-Mir-10-P3s  Sme-Mir-10-P3t  Sme-Mir-10-P3u  Snu-Mir-10-P3  Spt-Mir-10-P3b  Spt-Mir-10-P3c  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3b  Sto-Mir-10-P3c  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3c  Tgu-Mir-10-P3d  Tni-Mir-10-P3b2  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2  War-Mir-10-P3  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4  Xtr-Mir-10-P3b  Xtr-Mir-10-P3c  Xtr-Mir-10-P3d 
Node of Origin (locus) Bilateria
Node of Origin (family) Eumetazoa
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049979.1: 15365561-15365616 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-10-P3)		 Mir-10-P2-v1 NC_049979.1: 15363827-15363883 [+] UCSC
Mir-10-P2-v2 NC_049979.1: 15363828-15363882 [+] UCSC
Let-7-P3 NC_049979.1: 15364081-15364147 [+] UCSC
Mir-10-P3 NC_049979.1: 15365561-15365616 [+] UCSC
Let-7-P4 NC_049979.1: 15365859-15365925 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CGGCCUGCCAUCUGUUGGUGUGUUCCCCAUUCCCUGAGACCCUAACUUGUGAUGUCCAUGGCUCACAGGUUAGGAUCUUGGGAGCUGGGUGACAUACGCCCUCCACUUCAACAUCA
Get precursor sequence
Structure
        10          20         30        40        50       
CGGCCUGCCAUCUGUUG--      UC    -|    U    C            UGUC 
                   GUGUGU  CCCA UUCCC GAGA CCUAACUUGUGA    C
                   CAUACA  GGGU GAGGG UUCU GGAUUGGACACU    A
ACUACAACUUCACCUCCCG      GU    C^    -    A            CGGU 
    110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Bfl-Mir-10-P3_5p
mirBase accessionMIMAT0009483
Sequence 
0- UCCCUGAGACCCUAACUUGUGA -22
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Star sequence

Bfl-Mir-10-P3_3p*
mirBase accessionMIMAT0019147
Sequence 
34- ACAGGUUAGGAUCUUGGGAGCU -56
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