MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-10-P3b

Family name MIR-10 (all species)
Seed CCCUGAG
Species Horse (Equus caballus)
MiRBase ID eca-mir-125a
Paralogues Eca-Mir-10-P1b-v1  Eca-Mir-10-P1b-v2  Eca-Mir-10-P1c-v1  Eca-Mir-10-P1c-v2  Eca-Mir-10-P2b  Eca-Mir-10-P2c  Eca-Mir-10-P2d  Eca-Mir-10-P3c  Eca-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Ami-Mir-10-P3b  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cin-Mir-10-P3  Cja-Mir-10-P3b  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Egr-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Laf-Mir-10-P3b  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mgi-Mir-10-P3  Mml-Mir-10-P3b  Mmr-Mir-10-P3b  Mmu-Mir-10-P3b  Mom-Mir-10-P3  Mun-Mir-10-P3b  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pab-Mir-10-P3b  Pau-Mir-10-P3  Pbv-Mir-10-P3b  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rno-Mir-10-P3b  Rph-Mir-10-P3  Sha-Mir-10-P3b  Sko-Mir-10-P3  Snu-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Tni-Mir-10-P3b2  War-Mir-10-P3  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xtr-Mir-10-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009157.1: 21666722-21666781 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3b)		 Mir-10-P2b CM009157.1: 21666040-21666099 [+] UCSC Ensembl
Let-7-P1b CM009157.1: 21666218-21666284 [+] UCSC Ensembl
Mir-10-P3b CM009157.1: 21666722-21666781 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACCACACACCACAACUGCCGGCCUCUGGGUCCCUGAGACCCUUUAACCUGUGAGGACGUCCAGGGUCACAGGUGAGGUUCUUGGGAGCCUGGCGUCUGGCCCAACCACAAGCCUGGGGA
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Structure
        10          20        30        40        50        60
CACCACACACCACAACU--|    CCU UG  UC  UG   C    UA        GGACG 
                   GCCGG   C  GG  CC  AGA CCUU  ACCUGUGA     U
                   CGGUC   G  CC  GG  UCU GGAG  UGGACACU     C
AGGGGUCCGAACACCAACC^    UGC GU  GA  GU   U    --        GGGAC 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-10-P3b_5p
mirBase accessionMIMAT0013008
Sequence 
0- UCCCUGAGACCCUUUAACCUGUGA -24
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Star sequence

Eca-Mir-10-P3b_3p*
mirBase accessionMIMAT0013009
Sequence 
38- ACAGGUGAGGUUCUUGGGAGCC -60
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