Mir-10-P3b

MirGeneDB ID

Cfa-Mir-10-P3b

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-125a

Paralogues

Cfa-Mir-10-P1b-v1 Cfa-Mir-10-P1b-v2 Cfa-Mir-10-P1c-v1 Cfa-Mir-10-P1c-v2 Cfa-Mir-10-P2b Cfa-Mir-10-P2c Cfa-Mir-10-P2d Cfa-Mir-10-P3c Cfa-Mir-10-P3d

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3b Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3b Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3b Cin-Mir-10-P3 Cja-Mir-10-P3b Cpi-Mir-10-P3b Cpo-Mir-10-P3b Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3b Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3b Gja-Mir-10-P3b Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3b Isc-Mir-10-P3 Laf-Mir-10-P3b Lan-Mir-10-P3 Lch-Mir-10-P3b Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3b Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mgi-Mir-10-P3 Mml-Mir-10-P3b Mmr-Mir-10-P3b Mmu-Mir-10-P3b Mom-Mir-10-P3 Mun-Mir-10-P3b Nag-Mir-10-P3-v1 Nag-Mir-10-P3-v2 Nve-Mir-10 Oan-Mir-10-P3b Obi-Mir-10-P3 Ocu-Mir-10-P3b Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3b Pau-Mir-10-P3 Pbv-Mir-10-P3b Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3b Rph-Mir-10-P3 Sha-Mir-10-P3b Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3b Spu-Mir-10-P3 Sto-Mir-10-P3b Tca-Mir-10-P3 Tni-Mir-10-P3b2 War-Mir-10-P3 Xbo-Mir-10-P3 Xla-Mir-10-P3b Xtr-Mir-10-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(canFam3_add)

chr1: 105400273-105400332 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3b)

Mir-10-P3b chr1: 105400273-105400332 [-] UCSC Ensembl
Let-7-P1b chr1: 105400740-105400806 [-] UCSC Ensembl
Mir-10-P2b chr1: 105400925-105400984 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACCACACACCACACUGCCGGCCUCUGGGUCCCUGAGACCCUUUAACCUGUGAGGACAUCCAGGGUCACAGGUGAGGUUCUUGGGAGCCUGGCGUCUGGCGUAACCACAAGCCUGGGGA

Get precursor sequence

Structure

        10          20        30        40        50        60
CCACCACACACCACACU--|    CCU UG  UC  UG   C    UA        GGACA 
                   GCCGG   C  GG  CC  AGA CCUU  ACCUGUGA     U
                   CGGUC   G  CC  GG  UCU GGAG  UGGACACU     C
AGGGGUCCGAACACCAAUG^    UGC GU  GA  GU   U    --        GGGAC 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-10-P3b_5p

mirBase accession

MIMAT0006609

Sequence

0- UCCCUGAGACCCUUUAACCUGUGA -24

Get sequence

Proposed targets

TargetScanVert: cfa-miR-125a
miRDB: MIMAT0006609

Star sequence

Cfa-Mir-10-P3b_3p*

mirBase accession

None

Sequence

38- ACAGGUGAGGUUCUUGGGAGCC -60

Get sequence