Mir-10-P3b

MirGeneDB ID

Xla-Mir-10-P3b

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-125a

Paralogues

Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b3-v2 Xla-Mir-10-P1b4-v1 Xla-Mir-10-P1b4-v2 Xla-Mir-10-P1c3-v1 Xla-Mir-10-P1c3-v2 Xla-Mir-10-P1c4-v1 Xla-Mir-10-P1c4-v2 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d3-v2 Xla-Mir-10-P1d4-v1 Xla-Mir-10-P1d4-v2 Xla-Mir-10-P2b1 Xla-Mir-10-P2b2 Xla-Mir-10-P2c3 Xla-Mir-10-P2c4 Xla-Mir-10-P3c3 Xla-Mir-10-P3c4 Xla-Mir-10-P3d3 Xla-Mir-10-P3d4

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3b Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3b Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3b Cfa-Mir-10-P3b Cin-Mir-10-P3 Cja-Mir-10-P3b Cpi-Mir-10-P3b Cpo-Mir-10-P3b Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3b Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3b Gja-Mir-10-P3b Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3b Isc-Mir-10-P3 Laf-Mir-10-P3b Lan-Mir-10-P3 Lch-Mir-10-P3b Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3b Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mgi-Mir-10-P3 Mml-Mir-10-P3b Mmr-Mir-10-P3b Mmu-Mir-10-P3b Mom-Mir-10-P3 Mun-Mir-10-P3b Nag-Mir-10-P3-v1 Nag-Mir-10-P3-v2 Nve-Mir-10 Oan-Mir-10-P3b Obi-Mir-10-P3 Ocu-Mir-10-P3b Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3b Pau-Mir-10-P3 Pbv-Mir-10-P3b Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3b Rph-Mir-10-P3 Sha-Mir-10-P3b Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3b Spu-Mir-10-P3 Sto-Mir-10-P3b Tca-Mir-10-P3 Tni-Mir-10-P3b2 War-Mir-10-P3 Xbo-Mir-10-P3 Xtr-Mir-10-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(GCF_001663975.1_XLA_v2)

NC_030736.1: 115921680-115921738 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3b)

Mir-10-P3b NC_030736.1: 115921680-115921738 [-] UCSC Ensembl
Let-7-P1b3 NC_030736.1: 115937612-115937678 [-] UCSC Ensembl
Mir-10-P2b1 NC_030736.1: 115939452-115939509 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGAAGUCAUAUCAAUGGUGUGGUGUUCUGUCCCUGAGACCCUUAACCUGUGAGGAAGACAUAUGUCACAGGUGAGGUUCUGAGGAGCUGGGCGCCAUACACAGACCAUACGGAUCCAA

Get precursor sequence

Structure

        10          20        30        40        50         
AAGAAGUCAUAUCAAUG--|          U UC   G   C     A       GGAAG 
                   GUGUGGUGUUC G  CCU AGA CCUUA CCUGUGA     A
                   CAUACCGCGGG C  GGA UCU GGAGU GGACACU     C
AACCUAGGCAUACCAGACA^          U GA   G   U     -       GUAUA 
       110       100        90        80         70        60