MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-10-P1b3-v1

Family name MIR-10 (all species)
Seed ACCCUGU
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-10b
Paralogues Xla-Mir-10-P1b3-v2  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1b4-v2  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c3-v2  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1c4-v2  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d3-v2  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P1d4-v2  Xla-Mir-10-P2b1  Xla-Mir-10-P2b2  Xla-Mir-10-P2c3  Xla-Mir-10-P2c4  Xla-Mir-10-P3b  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1b-v1  Aca-Mir-10-P1b-v2  Adi-Mir-10  Aga-Mir-10-P1-v1  Aga-Mir-10-P1-v2  Agr-Mir-10-P1  Ami-Mir-10-P1b-v1  Ami-Mir-10-P1b-v2  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Bta-Mir-10-P1b-v1  Bta-Mir-10-P1b-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1b-v1  Cfa-Mir-10-P1b-v2  Cja-Mir-10-P1b-v1  Cja-Mir-10-P1b-v2  Cli-Mir-10-P1b-v1  Cli-Mir-10-P1b-v2  Cmi-Mir-10-P1b-v1  Cmi-Mir-10-P1b-v2  Cpi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v2  Cpo-Mir-10-P1b-v1  Cpo-Mir-10-P1b-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dlo-Mir-10-P1-v2  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1b-v1  Dno-Mir-10-P1b-v2  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1b-v1  Eca-Mir-10-P1b-v2  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1b-v1  Ete-Mir-10-P1b-v2  Gga-Mir-10-P1b-v1  Gga-Mir-10-P1b-v2  Gja-Mir-10-P1b-v1  Gja-Mir-10-P1b-v2  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hmi-Mir-10-P1b  Hru-Mir-10-P1  Hsa-Mir-10-P1b-v1  Hsa-Mir-10-P1b-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Laf-Mir-10-P1b  Lch-Mir-10-P1b  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1b-v1  Loc-Mir-10-P1b-v2  Mdo-Mir-10-P1b-v1  Mdo-Mir-10-P1b-v2  Mgi-Mir-10-P1  Mml-Mir-10-P1b-v1  Mml-Mir-10-P1b-v2  Mmr-Mir-10-P1b-v1  Mmr-Mir-10-P1b-v2  Mmu-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v2  Mom-Mir-10-P1  Mun-Mir-10-P1b-v1  Mun-Mir-10-P1b-v2  Neu-Mir-10-P1b-v1  Neu-Mir-10-P1b-v2  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1b-v1  Oan-Mir-10-P1b-v2  Ocu-Mir-10-P1b-v1  Ocu-Mir-10-P1b-v2  Ofu-Mir-10-P1  Pab-Mir-10-P1b-v1  Pab-Mir-10-P1b-v2  Pau-Mir-10-P1  Pbv-Mir-10-P1b-v1  Pbv-Mir-10-P1b-v2  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1b-v1  Rno-Mir-10-P1b-v2  Rph-Mir-10-P1  Sha-Mir-10-P1b-v1  Sha-Mir-10-P1b-v2  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1b  Spu-Mir-10-P1  Sto-Mir-10-P1b-v1  Sto-Mir-10-P1b-v2  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tgu-Mir-10-P1b-v1  Tgu-Mir-10-P1b-v2  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1b-v2 
Node of Origin (locus) X. laevis
Node of Origin (family) Eumetazoa
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030740.1: 67996928-67996989 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1b3-v1)		 Mir-10-P1b3-v1 NC_030740.1: 67996928-67996989 [-] UCSC Ensembl
Mir-10-P1b3-v2 NC_030740.1: 67996929-67996988 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACAUACAAUAUUAAAACGUUGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGGUUUUAACAUAGUCACAGAUUCGAUUCUAGGGGGAUAUAUGGUCGAUGCAAAUACUUCGAUUCCAGC
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Structure
        10          20        30        40        50        60 
GACAUACAAUAUUAAAA--|    U        A    G     C          UGGUUUU 
                   CGUUG CUAUAUGU CCCU UAGAA CGAAUUUGUG       \
                   GUAGC GGUAUAUA GGGG AUCUU GCUUAGACAC       A
CGACCUUAGCUUCAUAAAC^    U        -    G     A          UGAUACA 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-10-P1b3-v1_5p
mirBase accessionMIMAT0046424
Sequence 
0- UACCCUGUAGAACCGAAUUUGUG -23
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Star sequence

Xla-Mir-10-P1b3-v1_3p*
mirBase accessionMIMAT0046425
Sequence 
40- CAGAUUCGAUUCUAGGGGGAUA -62
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