MirGeneDB 2.1

MirGeneDB ID

Spu-Mir-10-P1

Family name MIR-10 (all species)
Seed ACCCUGU
Species Purple sea urchin (Strongylocentrotus purpuratus)
MiRBase ID spu-mir-10
Paralogues Spu-Mir-10-P2m  Spu-Mir-10-P2n  Spu-Mir-10-P3 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1b-v1  Aca-Mir-10-P1b-v2  Aca-Mir-10-P1c-v1  Aca-Mir-10-P1c-v2  Aca-Mir-10-P1d-v1  Aca-Mir-10-P1d-v2  Ami-Mir-10-P1b-v1  Ami-Mir-10-P1b-v2  Ami-Mir-10-P1c-v1  Ami-Mir-10-P1c-v2  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Bta-Mir-10-P1b-v1  Bta-Mir-10-P1b-v2  Bta-Mir-10-P1c-v1  Bta-Mir-10-P1c-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1b-v1  Cfa-Mir-10-P1b-v2  Cfa-Mir-10-P1c-v1  Cfa-Mir-10-P1c-v2  Cgi-Mir-10-P1  Cli-Mir-10-P1b-v1  Cli-Mir-10-P1b-v2  Cli-Mir-10-P1c-v1  Cli-Mir-10-P1c-v2  Cli-Mir-10-P1d-v1  Cli-Mir-10-P1d-v2  Cmi-Mir-10-P1b-v1  Cmi-Mir-10-P1b-v2  Cmi-Mir-10-P1c-v1  Cmi-Mir-10-P1c-v2  Cmi-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v2  Cpi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v2  Cpi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cpo-Mir-10-P1b-v1  Cpo-Mir-10-P1b-v2  Cpo-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v2  Csc-Mir-10-P1q1  Csc-Mir-10-P1q2  Csc-Mir-10-P1q3  Csc-Mir-10-P1r  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1b-v1  Dno-Mir-10-P1b-v2  Dno-Mir-10-P1c-v1  Dno-Mir-10-P1c-v2  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b1-v2  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1b2-v2  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c1-v2  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1c2-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Ebu-Mir-10-P1e  Ebu-Mir-10-P1f  Efe-Mir-10-P1i  Efe-Mir-10-P1j  Ete-Mir-10-P1b-v1  Ete-Mir-10-P1b-v2  Ete-Mir-10-P1c-v1  Ete-Mir-10-P1c-v2  Gga-Mir-10-P1b-v1  Gga-Mir-10-P1b-v2  Gga-Mir-10-P1c-v1  Gga-Mir-10-P1c-v2  Gga-Mir-10-P1d-v1  Gga-Mir-10-P1d-v2  Gja-Mir-10-P1b-v1  Gja-Mir-10-P1b-v2  Gja-Mir-10-P1c-v1  Gja-Mir-10-P1c-v2  Gja-Mir-10-P1d-v1  Gja-Mir-10-P1d-v2  Gmo-Mir-10-P1b1-v1  Gmo-Mir-10-P1b1-v2  Gmo-Mir-10-P1b2-v1  Gmo-Mir-10-P1b2-v2  Gmo-Mir-10-P1c1-v1  Gmo-Mir-10-P1c1-v2  Gmo-Mir-10-P1c2-v1  Gmo-Mir-10-P1c2-v2  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P1d1-v2  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hsa-Mir-10-P1b-v1  Hsa-Mir-10-P1b-v2  Hsa-Mir-10-P1c-v1  Hsa-Mir-10-P1c-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lan-Mir-10-P1g  Lan-Mir-10-P1h  Lch-Mir-10-P1b  Lch-Mir-10-P1c  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Loc-Mir-10-P1b-v1  Loc-Mir-10-P1b-v2  Loc-Mir-10-P1c-v1  Loc-Mir-10-P1c-v2  Loc-Mir-10-P1d-v1  Loc-Mir-10-P1d-v2  Lpo-Mir-10-P1k-v1  Lpo-Mir-10-P1k-v2  Lpo-Mir-10-P1l-v1  Lpo-Mir-10-P1l-v2  Lpo-Mir-10-P1m-v1  Lpo-Mir-10-P1m-v2  Lpo-Mir-10-P1n-v1  Lpo-Mir-10-P1n-v2  Lpo-Mir-10-P1o-v1  Lpo-Mir-10-P1o-v2  Lpo-Mir-10-P1p-v1  Lpo-Mir-10-P1p-v2  Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b1-v2  Mal-Mir-10-P1b2  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c1-v2  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2a-v2  Mal-Mir-10-P1c2b-v1  Mal-Mir-10-P1c2b-v2  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P1d1-v2  Mdo-Mir-10-P1b-v1  Mdo-Mir-10-P1b-v2  Mdo-Mir-10-P1c-v1  Mdo-Mir-10-P1c-v2  Mml-Mir-10-P1b-v1  Mml-Mir-10-P1b-v2  Mml-Mir-10-P1c-v1  Mml-Mir-10-P1c-v2  Mmu-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v2  Mmu-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v2  Mun-Mir-10-P1b-v1  Mun-Mir-10-P1b-v2  Mun-Mir-10-P1c-v1  Mun-Mir-10-P1c-v2  Mun-Mir-10-P1d-v1  Mun-Mir-10-P1d-v2  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1b-v1  Oan-Mir-10-P1b-v2  Oan-Mir-10-P1c-v1  Oan-Mir-10-P1c-v2  Ocu-Mir-10-P1b-v1  Ocu-Mir-10-P1b-v2  Ocu-Mir-10-P1c-v1  Ocu-Mir-10-P1c-v2  Pbv-Mir-10-P1b-v1  Pbv-Mir-10-P1b-v2  Pbv-Mir-10-P1c-v1  Pbv-Mir-10-P1c-v2  Pbv-Mir-10-P1d-v1  Pbv-Mir-10-P1d-v2  Pfl-Mir-10-P1  Pma-Mir-10-P1o1  Pma-Mir-10-P1o2  Pmi-Mir-10-P1  Rno-Mir-10-P1b-v1  Rno-Mir-10-P1b-v2  Rno-Mir-10-P1c-v1  Rno-Mir-10-P1c-v2  Sha-Mir-10-P1b-v1  Sha-Mir-10-P1b-v2  Sha-Mir-10-P1c-v1  Sha-Mir-10-P1c-v2  Sko-Mir-10-P1  Sme-Mir-10-P1s  Sme-Mir-10-P1t  Spt-Mir-10-P1b  Spt-Mir-10-P1c  Sto-Mir-10-P1b-v1  Sto-Mir-10-P1b-v2  Sto-Mir-10-P1c-v1  Sto-Mir-10-P1c-v2  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tgu-Mir-10-P1b-v1  Tgu-Mir-10-P1b-v2  Tgu-Mir-10-P1c-v1  Tgu-Mir-10-P1c-v2  Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b1-v2  Tni-Mir-10-P1b2  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c1-v2  Tni-Mir-10-P1c2-v1  Tni-Mir-10-P1c2-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P1d1-v2  Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b3-v2  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1b4-v2  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c3-v2  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1c4-v2  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d3-v2  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P1d4-v2  Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1b-v2  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1c-v2  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P1d-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Eumetazoa
Genome context
(Spur_5.0)
AAGJ06000006.1: 38277848-38277918 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCGGCUUUCUUCACUUCUUGGGCUUACAUCAACCCUGUAGAUCCGAAUUUGUGUCCGAGUUUCUCGCCUCUGGUAGUCACAGAUUCGUAUCUCUGGGUAACUGUAUCCCAGGACUUACAACUGCUGGAUGA
Get precursor sequence
Structure
        10           20        30        40        50        60     
UCGGCUUUCUUCACUUC---|    CU    UCA    UGU    C          UCCGAGUUUCU 
                    UUGGG  UACA   ACCC   AGAU CGAAUUUGUG           C
                    GACCC  AUGU   UGGG   UCUA GCUUAGACAC           G
AGUAGGUCGUCAACAUUCAG^    U-    CAA    UC-    U          UGAUGGUCUCC 
 .       120       110        100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
32 Bl Eg Ga Ov Pl To To
Mature sequence

Spu-Mir-10-P1_5p

mirBase accessionMIMAT0009654
Sequence
0- AACCCUGUAGAUCCGAAUUUGUGU -24
Get sequence
Star sequence

Spu-Mir-10-P1_3p*

mirBase accessionNone
Sequence
48- ACAGAUUCGUAUCUCUGGGUAAC -71
Get sequence