Mir-10-P1d-v1

MirGeneDB ID

Xtr-Mir-10-P1d-v1

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-10c

Paralogues

Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1b-v2 Xtr-Mir-10-P1c-v1 Xtr-Mir-10-P1c-v2 Xtr-Mir-10-P1d-v2 Xtr-Mir-10-P2b Xtr-Mir-10-P2c Xtr-Mir-10-P3b Xtr-Mir-10-P3c Xtr-Mir-10-P3d

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1d-v1 Aca-Mir-10-P1d-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Ami-Mir-10-P1d-v1 Ami-Mir-10-P1d-v2 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cli-Mir-10-P1d-v1 Cli-Mir-10-P1d-v2 Cmi-Mir-10-P1d-v1 Cmi-Mir-10-P1d-v2 Cpi-Mir-10-P1d-v1 Cpi-Mir-10-P1d-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dre-Mir-10-P1d1-v1 Dre-Mir-10-P1d1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Efe-Mir-10-P1 Egr-Mir-10-P1 Gga-Mir-10-P1d-v1 Gga-Mir-10-P1d-v2 Gja-Mir-10-P1d-v1 Gja-Mir-10-P1d-v2 Gmo-Mir-10-P1d1-v1 Gmo-Mir-10-P1d1-v2 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hru-Mir-10-P1 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lch-Mir-10-P1d Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1d-v1 Loc-Mir-10-P1d-v2 Mal-Mir-10-P1d1-v1 Mal-Mir-10-P1d1-v2 Mgi-Mir-10-P1 Mom-Mir-10-P1 Mun-Mir-10-P1d-v1 Mun-Mir-10-P1d-v2 Npo-Mir-10-P1 Nve-Mir-10 Ofu-Mir-10-P1 Pau-Mir-10-P1 Pbv-Mir-10-P1d-v1 Pbv-Mir-10-P1d-v2 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tni-Mir-10-P1d1-v1 Tni-Mir-10-P1d1-v2 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d3-v2 Xla-Mir-10-P1d4-v1 Xla-Mir-10-P1d4-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(xenTro9_add)

chr2: 142821736-142821794 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1d-v1)

Mir-10-P1d-v1 chr2: 142821736-142821794 [-] UCSC Ensembl
Mir-10-P1d-v2 chr2: 142821737-142821793 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCUUGCGAUAUCAAAGAGGCGCUUAUAUGCACCCUGUAGAAUCGAAUUUGUGUGAGUUCUGAACCACAGAUUCGUCUCUAGGGGGGUAUAUGGGUGAUGCUACAGACUUCUCUCUAGG

Get precursor sequence

Structure

        10        20          30        40        50         
GUCUUGCGAUAUCAAAGAGG--|          A    G    AU          UGAGU 
                      CGCUUAUAUGC CCCU UAGA  CGAAUUUGUG     U
                      GUGGGUAUAUG GGGG AUCU  GCUUAGACAC     C
GGAUCUCUCUUCAGACAUCGUA^          -    G    CU          CAAGU 
       110       100        90         80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-10-P1d-v1_5p

mirBase accession

MIMAT0003559

Sequence

0- CACCCUGUAGAAUCGAAUUUGUG -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-10c

Star sequence

Xtr-Mir-10-P1d-v1_3p* (predicted)

mirBase accession

None

Sequence

37- CAGAUUCGUCUCUAGGGGGGUA -59

Get sequence