MirGeneDB 2.1
MirGeneDB ID

Gja-Mir-10-P1d-v1

Family name MIR-10 (all species)
Seed ACCCUGU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-10-P1b-v1  Gja-Mir-10-P1b-v2  Gja-Mir-10-P1c-v1  Gja-Mir-10-P1c-v2  Gja-Mir-10-P1d-v2  Gja-Mir-10-P2b  Gja-Mir-10-P2c  Gja-Mir-10-P2d  Gja-Mir-10-P3b  Gja-Mir-10-P3c  Gja-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1d-v1  Aca-Mir-10-P1d-v2  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cgi-Mir-10-P1  Cli-Mir-10-P1d-v1  Cli-Mir-10-P1d-v2  Cmi-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Gga-Mir-10-P1d-v1  Gga-Mir-10-P1d-v2  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P1d1-v2  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Loc-Mir-10-P1d-v1  Loc-Mir-10-P1d-v2  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P1d1-v2  Mun-Mir-10-P1d-v1  Mun-Mir-10-P1d-v2  Npo-Mir-10-P1  Nve-Mir-10  Pbv-Mir-10-P1d-v1  Pbv-Mir-10-P1d-v2  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Sko-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P1d1-v2  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d3-v2  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P1d4-v2  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P1d-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015167536.1: 410034-410093 [-]
Precursor
(pre-Mir +30nt flank)
CAAAAGCCAGAUUCUCCAGUCGUCUAUAUAUACCCUGUAGAAUCGAAUUUGUGUGCCCGCCUCAAUCACAGAUUCGUCUCUAGGGGAGUAUAUGGAUGACGCCAGAGCCUUGCUAGCCUC
Get precursor sequence
Structure
        10          20        30        40        50          
CAAAAGCCAGAUUCUCCA--|            A    G    AU          UGCCCG 
                    GUCGUCUAUAUAU CCCU UAGA  CGAAUUUGUG      \
                    CAGUAGGUAUAUG GGGG AUCU  GCUUAGACAC      C
CUCCGAUCGUUCCGAGACCG^            A    -    CU          UAACUC 
.       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Mature sequence

Gja-Mir-10-P1d-v1_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGAAUCGAAUUUGUG -23
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Star sequence

Gja-Mir-10-P1d-v1_3p* (predicted)
mirBase accessionNone
Sequence 
38- CAGAUUCGUCUCUAGGGGAGUA -60
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