MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-10-P1d1-v2

Family name MIR-10 (all species)
Seed CCCUGUA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-10b-1
Paralogues Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b1-v2  Tni-Mir-10-P1b2  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c1-v2  Tni-Mir-10-P1c2-v1  Tni-Mir-10-P1c2-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Tni-Mir-10-P3b2  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1d-v1  Aca-Mir-10-P1d-v2  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cgi-Mir-10-P1  Cli-Mir-10-P1d-v1  Cli-Mir-10-P1d-v2  Cmi-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Gga-Mir-10-P1d-v1  Gga-Mir-10-P1d-v2  Gja-Mir-10-P1d-v1  Gja-Mir-10-P1d-v2  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P1d1-v2  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Loc-Mir-10-P1d-v1  Loc-Mir-10-P1d-v2  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P1d1-v2  Mun-Mir-10-P1d-v1  Mun-Mir-10-P1d-v2  Npo-Mir-10-P1  Nve-Mir-10  Pbv-Mir-10-P1d-v1  Pbv-Mir-10-P1d-v2  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Sko-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P1d-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 9: 4255307-4255365 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1d1-v2)		 Mir-10-P1d1-v1 9: 4255306-4255366 [+] UCSC Ensembl
Mir-10-P1d1-v2 9: 4255307-4255365 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCAGUUUACACGUUAGUUGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGAGUUCAGACAGUCACAAGUACGUCUCUACAGGAAUACAUGGGCAACUGAAAAUCCACAGCGGCCA
Get precursor sequence
Structure
        10          20        30        40        50         
GGGCAGUUUACACGUUA--|        A   AC        AC  A       UGAGUU 
                   GUUGUCUAU UGU  CCUGUAGA  CG AUUUGUG      C
                   CAACGGGUA AUA  GGACAUCU  GC UGAACAC      A
ACCGGCGACACCUAAAAGU^        C   A-        CU  A       UGACAG 
       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-10-P1d1-v2_5p
mirBase accessionMIMAT0002964
Sequence 
0- ACCCUGUAGAACCGAAUUUGUGU -23
Get sequence
Star sequence

Tni-Mir-10-P1d1-v2_3p* (predicted)
mirBase accessionNone
Sequence 
38- CAAGUACGUCUCUACAGGAAU -59
Get sequence