MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-10-P3d2

Family name MIR-10 (all species)
Seed CCCUGAG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-125b
Paralogues Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b1-v2  Tni-Mir-10-P1b2  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c1-v2  Tni-Mir-10-P1c2-v1  Tni-Mir-10-P1c2-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P1d1-v2  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Tni-Mir-10-P3b2  Tni-Mir-10-P3d1 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3d  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Ami-Mir-10-P3d  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3d  Cfa-Mir-10-P3d  Cin-Mir-10-P3  Cja-Mir-10-P3d  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3d  Cpo-Mir-10-P3d  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dre-Mir-10-P3d2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Eca-Mir-10-P3d  Egr-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3d  Gga-Mir-10-P3d  Gja-Mir-10-P3d  Gmo-Mir-10-P3d2  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Laf-Mir-10-P3d  Lan-Mir-10-P3  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Loc-Mir-10-P3d  Mal-Mir-10-P3d2  Mdo-Mir-10-P3d  Mgi-Mir-10-P3  Mml-Mir-10-P3d  Mmr-Mir-10-P3d  Mmu-Mir-10-P3d  Mom-Mir-10-P3  Mun-Mir-10-P3d  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Neu-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3d  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pab-Mir-10-P3d  Pau-Mir-10-P3  Pbv-Mir-10-P3d  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rno-Mir-10-P3d  Rph-Mir-10-P3  Sha-Mir-10-P3d  Sko-Mir-10-P3  Snu-Mir-10-P3  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3d  War-Mir-10-P3  Xbo-Mir-10-P3  Xtr-Mir-10-P3d 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 7: 5613643-5613704 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3d2)		 Mir-10-P3d2 7: 5613643-5613704 [-] UCSC Ensembl
Let-7-P1d2 7: 5619183-5619249 [-] UCSC Ensembl
Mir-10-P2d2 7: 5619637-5619693 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAUAAAACCGCGAUCUGUACCUCUCUCAUUCCCUGAGACCCUAACUUGUGACGUUGUGCUGUGAUGUGCACGGGUUGGGUUCUUGGGAGCUGCGAGGGGCGCUCACACAUCUUUAACCUGA
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Structure
        10          20         30        40        50        60
GGAUAAAACCGCGAUCU-- UA      U  -|    U    C           ACGUUGUG 
                   G  CCUCUC CA UUCCC GAGA CCUAACUUGUG        C
                   C  GGGGAG GU GAGGG UUCU GGGUUGGGCAC        U
AGUCCAAUUUCUACACACU GC      C  C^    -    U           GUGUAGUG 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-10-P3d2_5p
mirBase accessionMIMAT0003062
Sequence 
0- UCCCUGAGACCCUAACUUGUGA -22
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Star sequence

Tni-Mir-10-P3d2_3p*
mirBase accessionNone
Sequence 
40- ACGGGUUGGGUUCUUGGGAGCU -62
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