MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-10-P3d

Family name MIR-10 (all species)
Seed CCCUGAG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-125b-1
Paralogues Cpo-Mir-10-P1b-v1  Cpo-Mir-10-P1b-v2  Cpo-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v2  Cpo-Mir-10-P2b  Cpo-Mir-10-P2c  Cpo-Mir-10-P2d  Cpo-Mir-10-P3b  Cpo-Mir-10-P3c 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3d  Ami-Mir-10-P3d  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3d  Cfa-Mir-10-P3d  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3d  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3d  Gga-Mir-10-P3d  Gja-Mir-10-P3d  Gmo-Mir-10-P3d1  Gmo-Mir-10-P3d2  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Loc-Mir-10-P3d  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2  Mdo-Mir-10-P3d  Mml-Mir-10-P3d  Mmu-Mir-10-P3d  Mun-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3d  Ovu-Mir-10-P3  Pbv-Mir-10-P3d  Pmi-Mir-10-P3  Rno-Mir-10-P3d  Sha-Mir-10-P3d  Sko-Mir-10-P3  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3d  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2  Xbo-Mir-10-P3  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4  Xtr-Mir-10-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(cavPor3)
scaffold_19: 26176071-26176132 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-10-P3d)
Mir-10-P2d scaffold_19: 26131486-26131542 [+] UCSC
Let-7-P1d scaffold_19: 26138016-26138082 [+] UCSC
Mir-10-P3d scaffold_19: 26176071-26176132 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AAGAAAAAAAUCGGUUCGCGCUCCUCUCAGUCCCUGAGACCCUAACUUGUGAUGUUUACCGUUUAAAUCCACGGGUUAGGCUCUUGGGAGCUGCGAGUCGUGCCUUCACAUCUUGGAAAUUU
Get precursor sequence
Structure
        10          20        30        40        50        60
AAGAAAAAAAUCGGUUC--|   UC   U   UC  UG   C           AUGUUUAC 
                   GCGC  CUC CAG  CC  AGA CCUAACUUGUG        C
                   CGUG  GAG GUC  GG  UCU GGAUUGGGCAC        G
UUUAAAGGUUCUACACUUC^   CU   C   GA  GU   C           CUAAAUUU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Cpo-Mir-10-P3d_5p

mirBase accessionMIMAT0046967
Sequence
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
Star sequence

Cpo-Mir-10-P3d_3p*

mirBase accessionMIMAT0046968
Sequence
40- ACGGGUUAGGCUCUUGGGAGCU -62
Get sequence