MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-10-P3d1

Family name MIR-10 (all species)
Seed CCCUGAG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-125b-1
Paralogues Gmo-Mir-10-P1b1-v1  Gmo-Mir-10-P1b1-v2  Gmo-Mir-10-P1b2-v1  Gmo-Mir-10-P1b2-v2  Gmo-Mir-10-P1c1-v1  Gmo-Mir-10-P1c1-v2  Gmo-Mir-10-P1c2-v1  Gmo-Mir-10-P1c2-v2  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P1d1-v2  Gmo-Mir-10-P2c2  Gmo-Mir-10-P2d1  Gmo-Mir-10-P2d2  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Gmo-Mir-10-P3c2  Gmo-Mir-10-P3d2 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3d  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Ami-Mir-10-P3d  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3d  Cfa-Mir-10-P3d  Cin-Mir-10-P3  Cja-Mir-10-P3d  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3d  Cpo-Mir-10-P3d  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dre-Mir-10-P3d1  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Eca-Mir-10-P3d  Egr-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3d  Gga-Mir-10-P3d  Gja-Mir-10-P3d  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Laf-Mir-10-P3d  Lan-Mir-10-P3  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Loc-Mir-10-P3d  Mal-Mir-10-P3d1  Mdo-Mir-10-P3d  Mgi-Mir-10-P3  Mml-Mir-10-P3d  Mmr-Mir-10-P3d  Mmu-Mir-10-P3d  Mom-Mir-10-P3  Mun-Mir-10-P3d  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Neu-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3d  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pab-Mir-10-P3d  Pau-Mir-10-P3  Pbv-Mir-10-P3d  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rno-Mir-10-P3d  Rph-Mir-10-P3  Sha-Mir-10-P3d  Sko-Mir-10-P3  Snu-Mir-10-P3  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3d  Tni-Mir-10-P3d1  War-Mir-10-P3  Xbo-Mir-10-P3  Xtr-Mir-10-P3d 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1068: 137441-137502 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3d1)		 Let-7-P1d1 GeneScaffold_1068: 125983-126049 [+] UCSC Ensembl
Mir-10-P3d1 GeneScaffold_1068: 137441-137502 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUGCUGCUGAUAGAUGUGUCUCUCCCUGUCCCUGAGACCCUAACUUGUGACGUUGUGCUGUCAUGUCCACGGGUUAGCUUCUCGGGAGCUGAGAGGGAUUCAAGGGCGUCUCUGUGACUC
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Structure
        10          20        30        40        50        60
UGCUGCUGCUGAUAGAU--|U       CCU UC       CC          ACGUUGUG 
                   G GUCUCUC   G  CCUGAGA  CUAACUUGUG        C
                   C UAGGGAG   C  GGGCUCU  GAUUGGGCAC        U
CUCAGUGUCUCUGCGGGAA^U       AGU GA       UC          CUGUACUG 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-10-P3d1_5p
mirBase accessionMIMAT0044093
Sequence 
0- UCCCUGAGACCCUAACUUGUGA -22
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Star sequence

Gmo-Mir-10-P3d1_3p*
mirBase accessionNone
Sequence 
40- ACGGGUUAGCUUCUCGGGAGCU -62
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