Mir-10-P3c2

MirGeneDB ID

Gmo-Mir-10-P3c2

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-125b-2

Paralogues

Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b1-v2 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1b2-v2 Gmo-Mir-10-P1c1-v1 Gmo-Mir-10-P1c1-v2 Gmo-Mir-10-P1c2-v1 Gmo-Mir-10-P1c2-v2 Gmo-Mir-10-P1d1-v1 Gmo-Mir-10-P1d1-v2 Gmo-Mir-10-P2c2 Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3c Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3c Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3c Cfa-Mir-10-P3c Cin-Mir-10-P3 Cja-Mir-10-P3c Cli-Mir-10-P3c Cpi-Mir-10-P3c Cpo-Mir-10-P3c Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3c Dpu-Mir-10-P3 Dre-Mir-10-P3c2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3c Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3c Gga-Mir-10-P3c Gja-Mir-10-P3c Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3c Isc-Mir-10-P3 Laf-Mir-10-P3c Lan-Mir-10-P3 Lch-Mir-10-P3c Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3c Mal-Mir-10-P3c2 Mdo-Mir-10-P3c Mgi-Mir-10-P3 Mml-Mir-10-P3c Mmr-Mir-10-P3c Mmu-Mir-10-P3c Mom-Mir-10-P3 Mun-Mir-10-P3c Nag-Mir-10-P3-v1 Nag-Mir-10-P3-v2 Neu-Mir-10-P3c Nve-Mir-10 Oan-Mir-10-P3c Obi-Mir-10-P3 Ocu-Mir-10-P3c Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3c Pau-Mir-10-P3 Pbv-Mir-10-P3c Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3c Rph-Mir-10-P3 Sha-Mir-10-P3c Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3c Spu-Mir-10-P3 Sto-Mir-10-P3c Tca-Mir-10-P3 Tgu-Mir-10-P3c War-Mir-10-P3 Xbo-Mir-10-P3 Xtr-Mir-10-P3c

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_4232: 169613-169675 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3c2)

Mir-10-P2c2 GeneScaffold_4232: 158911-158969 [+] UCSC Ensembl
Let-7-P1c2 GeneScaffold_4232: 160003-160069 [+] UCSC Ensembl
Mir-10-P3c2 GeneScaffold_4232: 169613-169675 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAGUGGAACGCCAUUGGUGCUUCACCUGCUCCCUGAGACCCUAACUUGUGAGCUCUCUUGGUAAAAUAUCACGGGUUAGGCUCUUGGGACGCGGGCGGAGGGCACAAUCGACCUUCAACCGA

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Structure

        10          20        30         40        50        60 
CCAGUGGAACGCCAUUG--  G    A     -|   U    C            GCUCUCUU 
                   GU CUUC CCUGC UCCC GAGA CCUAACUUGUGA        \
                   CG GAGG GGGCG AGGG UUCU GGAUUGGGCACU        G
AGCCAACUUCCAGCUAACA  G    C     C^   -    C            AUAAAAUG 
 120       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-10-P3c2_5p

mirBase accession

MIMAT0044093

Sequence

0- UCCCUGAGACCCUAACUUGUGA -22

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Star sequence

Gmo-Mir-10-P3c2_3p*

mirBase accession

MIMAT0044273

Sequence

41- ACGGGUUAGGCUCUUGGGACGC -63

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