MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-10-P3c2

Family name MIR-10 (all species)
Seed CCCUGAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-125b-3
Paralogues Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b1-v2  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1b2-v2  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c1-v2  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1c2-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dre-Mir-10-P2c1  Dre-Mir-10-P2c2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dre-Mir-10-P3c1  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3c  Ami-Mir-10-P3c  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3c  Cfa-Mir-10-P3c  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3c  Cpi-Mir-10-P3c  Cpo-Mir-10-P3c  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3c  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3c  Gga-Mir-10-P3c  Gja-Mir-10-P3c  Gmo-Mir-10-P3c2  Hsa-Mir-10-P3c  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3c  Lgi-Mir-10-P3  Loc-Mir-10-P3c  Mal-Mir-10-P3c2  Mdo-Mir-10-P3c  Mml-Mir-10-P3c  Mmu-Mir-10-P3c  Mun-Mir-10-P3c  Nve-Mir-10  Oan-Mir-10-P3c  Obi-Mir-10-P3  Ocu-Mir-10-P3c  Ovu-Mir-10-P3  Pbv-Mir-10-P3c  Pmi-Mir-10-P3  Rno-Mir-10-P3c  Sha-Mir-10-P3c  Sko-Mir-10-P3  Spt-Mir-10-P3c  Spu-Mir-10-P3  Sto-Mir-10-P3c  Tca-Mir-10-P3  Tgu-Mir-10-P3c  Xbo-Mir-10-P3  Xtr-Mir-10-P3c 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(danRer11)
chr10: 38051674-38051736 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3c2)
Mir-10-P3c2 chr10: 38051674-38051736 [-] UCSC Ensembl
Let-7-P1c2 chr10: 38072088-38072154 [-] UCSC Ensembl
Mir-10-P2c2 chr10: 38074322-38074380 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGUGCGGCCACCGCUGCACUCCUCCUGGUCCCUGAGACCCUAACUUGUGAGCUUUGUGUGCUAAAAAUCACAGGUUAAGCUCUUGGGACCUGGGCAGAGGGCAAAAGCACUGGAUCCCCUG
Get precursor sequence
Structure
        10          20         30         40        50        60 
CCCGUGCGGCCACCGCU--  A   CU   -      U-|  ACCC          GCUUUGUG 
                   GC CUC  CCU GGUCCC  GAG    UAACUUGUGA        \
                   CG GAG  GGG CCAGGG  CUC    AUUGGACACU        U
GUCCCCUAGGUCACGAAAA  G   AC   U      UU^  GA--          AAAAAUCG 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-10-P3c2_5p

mirBase accessionMIMAT0001821
Sequence
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
Proposed targets TargetScanFish: dre-miR-125b
Star sequence

Dre-Mir-10-P3c2_3p*

mirBase accessionMIMAT0031965
Sequence
41- ACAGGUUAAGCUCUUGGGACCU -63
Get sequence