MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-10-P1d1-v2

Family name MIR-10 (all species)
Seed CCCUGUA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-10b-2
Paralogues Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b1-v2  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1b2-v2  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c1-v2  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1c2-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P2c1  Dre-Mir-10-P2c2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1d-v1  Aca-Mir-10-P1d-v2  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cgi-Mir-10-P1  Cli-Mir-10-P1d-v1  Cli-Mir-10-P1d-v2  Cmi-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Gga-Mir-10-P1d-v1  Gga-Mir-10-P1d-v2  Gja-Mir-10-P1d-v1  Gja-Mir-10-P1d-v2  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P1d1-v2  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Loc-Mir-10-P1d-v1  Loc-Mir-10-P1d-v2  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P1d1-v2  Mun-Mir-10-P1d-v1  Mun-Mir-10-P1d-v2  Npo-Mir-10-P1  Nve-Mir-10  Pbv-Mir-10-P1d-v1  Pbv-Mir-10-P1d-v2  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Sko-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P1d1-v2  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P1d-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(danRer11)
chr23: 36130017-36130077 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1d1-v2)
Mir-196-P4a chr23: 36088111-36088169 [+] UCSC Ensembl
Mir-10-P1d1-v1 chr23: 36130016-36130078 [+] UCSC Ensembl
Mir-10-P1d1-v2 chr23: 36130017-36130077 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAGGGCCUGUCAGUAGUCGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUCCAAAACAUCAAAAUCGCAAAUACGUCUCUACAGGAAUACAUGGGCGACGUAAAAGCCACGAACGCCA
Get precursor sequence
Structure
        10          20        30        40        50        60
AGAAGGGCCUGUCAGUA--|        A   AC        AC  A       UCCAAAA 
                   GUCGUCUAU UGU  CCUGUAGA  CG AUUUGUG       C
                   CAGCGGGUA AUA  GGACAUCU  GC UAAACGC       A
ACCGCAAGCACCGAAAAUG^        C   A-        CU  A       UAAAACU 
 .       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-10-P1d1-v2_5p

mirBase accessionMIMAT0001268
Sequence
0- ACCCUGUAGAACCGAAUUUGUGU -23
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Proposed targets TargetScanFish: dre-miR-10b
Star sequence

Dre-Mir-10-P1d1-v2_3p* (predicted)

mirBase accessionMIMAT0031934
Sequence
39- GCAAAUACGUCUCUACAGGAAU -61
Get sequence