MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-10-P2c2

Family name MIR-10 (all species)
Seed ACCCGUA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-99-2
Paralogues Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b1-v2  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1b2-v2  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c1-v2  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1c2-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dre-Mir-10-P2c1  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2c  Adi-Mir-10  Aga-Mir-10-P2  Agr-Mir-10-P2  Ami-Mir-10-P2c  Asp-Mir-10  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bko-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2c  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2c  Cin-Mir-10-P2  Cja-Mir-10-P2c  Cli-Mir-10-P2c  Cmi-Mir-10-P2c  Cpi-Mir-10-P2c  Cpo-Mir-10-P2c  Cte-Mir-10-P2  Dan-Mir-10-P2  Dgr-Mir-10-P2  Dlo-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dno-Mir-10-P2c  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Eba-Mir-10-P2  Eca-Mir-10-P2c  Ete-Mir-10-P2c  Gga-Mir-10-P2c  Gja-Mir-10-P2c  Gmo-Mir-10-P2c2  Gpa-Mir-10-P2  Gsp-Mir-10-P2  Hru-Mir-10-P2  Hsa-Mir-10-P2c  Isc-Mir-10-P2  Laf-Mir-10-P2c  Lan-Mir-10-P2  Lch-Mir-10-P2c  Lgi-Mir-10-P2  Lhy-Mir-10-P2  Llo-Mir-10-P2  Loc-Mir-10-P2c  Mal-Mir-10-P2c2  Mgi-Mir-10-P2  Mml-Mir-10-P2c  Mmr-Mir-10-P2c  Mmu-Mir-10-P2c  Mom-Mir-10-P2  Mun-Mir-10-P2c  Neu-Mir-10-P2c  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2c  Obi-Mir-10-P2  Ocu-Mir-10-P2c  Ofu-Mir-10-P2  Ovu-Mir-10-P2  Pab-Mir-10-P2c  Pau-Mir-10-P2  Pbv-Mir-10-P2c  Pca-Mir-10-P2  Pdu-Mir-10-P2  Pfl-Mir-10-P2  Ple-Mir-10-P2  Pmi-Mir-10-P2  Pve-Mir-10-P2  Rno-Mir-10-P2c  Rph-Mir-10-P2  Sha-Mir-10-P2c  Sko-Mir-10-P2  Snu-Mir-10-P2  Spt-Mir-10-P2c  Sto-Mir-10-P2c  Tca-Mir-10-P2  Tgu-Mir-10-P2c  Tur-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as  Xtr-Mir-10-P2c 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(danRer11)		 chr10: 38074322-38074380 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P2c2)		 Mir-10-P3c2 chr10: 38051674-38051736 [-] UCSC Ensembl
Let-7-P1c2 chr10: 38072088-38072154 [-] UCSC Ensembl
Mir-10-P2c2 chr10: 38074322-38074380 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCAUGAGAAGCUUUGACCACUUGUCACAAACCCGUAGAUCCGAUCUUGUGGCGUAAUCGGCAACCCAAGCUCGAUUCUGUGGGUCUCUGUCACUGUGGUGAACUCGACGCACUCUUU
Get precursor sequence
Structure
        10         20        30          40        50         
UUUCAUGAGAAGCUUUG-     UU  C   A--|        UC   U    U GCGUAA 
                  ACCAC  GU ACA   ACCCGUAGA  CGA CUUG G      U
                  UGGUG  CA UGU   UGGGUGUCU  GCU GAAC C      C
UUUCUCACGCAGCUCAAG     U-  C   CUC^        UA   C    - CAACGG 
       110       100         90        80        70         60
Deep sequencing
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CommentBased on the 3' DcRNA reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-10-P2c2_5p
mirBase accessionMIMAT0001812
Sequence 
0- AACCCGUAGAUCCGAUCUUGUG -22
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Proposed targets TargetScanFish: dre-miR-99
Star sequence

Dre-Mir-10-P2c2_3p*
mirBase accessionNone
Sequence 
37- CAAGCUCGAUUCUGUGGGUCUC -59
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