Mir-10-P2

MirGeneDB ID

Cbr-Mir-10-P2

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-51

Paralogues

Cbr-Mir-10-P1 Cbr-Mir-10-P3m Cbr-Mir-10-P3n

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2b Aca-Mir-10-P2c Aca-Mir-10-P2d Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2b Ami-Mir-10-P2c Ami-Mir-10-P2d Asp-Mir-10 Asu-Mir-10-P2o3 Asu-Mir-10-P2o4 Asu-Mir-10-P2o5 Asu-Mir-10-P2o6 Asu-Mir-10-P2o7 Asu-Mir-10-P2o8 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2b Bta-Mir-10-P2c Bta-Mir-10-P2d Cel-Mir-10-P2 Cfa-Mir-10-P2b Cfa-Mir-10-P2c Cfa-Mir-10-P2d Cin-Mir-10-P2 Cja-Mir-10-P2b Cja-Mir-10-P2c Cja-Mir-10-P2d Cli-Mir-10-P2c Cli-Mir-10-P2d Cmi-Mir-10-P2c Cmi-Mir-10-P2d Cpi-Mir-10-P2b Cpi-Mir-10-P2c Cpi-Mir-10-P2d Cpo-Mir-10-P2b Cpo-Mir-10-P2c Cpo-Mir-10-P2d Csc-Mir-10-P2r1 Csc-Mir-10-P2r2 Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2c Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Ebu-Mir-10-P2e Ebu-Mir-10-P2f Eca-Mir-10-P2b Eca-Mir-10-P2c Eca-Mir-10-P2d Efe-Mir-10-P2g Efe-Mir-10-P2h Efe-Mir-10-P2i Efe-Mir-10-P2j Efe-Mir-10-P2k Ete-Mir-10-P2b Ete-Mir-10-P2c Ete-Mir-10-P2d Gga-Mir-10-P2c Gga-Mir-10-P2d Gja-Mir-10-P2b Gja-Mir-10-P2c Gja-Mir-10-P2d Gmo-Mir-10-P2c2 Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2b Hsa-Mir-10-P2c Hsa-Mir-10-P2d Isc-Mir-10-P2 Laf-Mir-10-P2b Laf-Mir-10-P2c Laf-Mir-10-P2d Lan-Mir-10-P2 Lch-Mir-10-P2b Lch-Mir-10-P2c Lch-Mir-10-P2d Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2c Loc-Mir-10-P2d Lpo-Mir-10-P2o Lpo-Mir-10-P2p Lpo-Mir-10-P2q Mal-Mir-10-P2c2 Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mgi-Mir-10-P2 Mml-Mir-10-P2b Mml-Mir-10-P2c Mml-Mir-10-P2d Mmr-Mir-10-P2b Mmr-Mir-10-P2c Mmr-Mir-10-P2d Mmu-Mir-10-P2b Mmu-Mir-10-P2c Mmu-Mir-10-P2d Mom-Mir-10-P2 Mun-Mir-10-P2b Mun-Mir-10-P2c Mun-Mir-10-P2d Neu-Mir-10-P2b Neu-Mir-10-P2c Neu-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2b Oan-Mir-10-P2c Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2b Ocu-Mir-10-P2c Ocu-Mir-10-P2d Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2b Pab-Mir-10-P2c Pab-Mir-10-P2d Pau-Mir-10-P2 Pbv-Mir-10-P2b Pbv-Mir-10-P2c Pbv-Mir-10-P2d Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pma-Mir-10-P2o1 Pma-Mir-10-P2o2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2b Rno-Mir-10-P2c Rno-Mir-10-P2d Rph-Mir-10-P2 Sha-Mir-10-P2b Sha-Mir-10-P2c Sha-Mir-10-P2d Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2b Spt-Mir-10-P2c Spt-Mir-10-P2d Spu-Mir-10-P2m Spu-Mir-10-P2n Sto-Mir-10-P2b Sto-Mir-10-P2c Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2c Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Tur-Mir-10-P2 War-Mir-10-P2s War-Mir-10-P2t Xbo-Mir-10-P2 Xbo-Mir-10-P2-as Xla-Mir-10-P2b1 Xla-Mir-10-P2b2 Xla-Mir-10-P2c3 Xla-Mir-10-P2c4 Xtr-Mir-10-P2b Xtr-Mir-10-P2c

Node of Origin (locus)

Bilateria

Node of Origin (family)

Eumetazoa

Genome context
(CB4)

IV: 7366632-7366691 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2)

Mir-52-P1 IV: 7363031-7363092 [+] Ensembl
Mir-10-P2 IV: 7366632-7366691 [+] Ensembl
Mir-277-P6a IV: 7400660-7400721 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CAACGUCAAACGGAUCCGAAGACGUCCAUCUACCCGUAGCUCCUUGCCAUGUUACUGGUAAAAGUGAACAUGGAAGUUGGUCCGGGUACAUGGCCAGUAGGAGUUAUGAAGACGUGUUGA

Get precursor sequence

Structure

        10        20          30        40         50          
CAACGUCAAACGGAUCCGAAG-  GU-|   C      UA   C-   G       ACUGGU 
                      AC   CCAU UACCCG  GCU  CUU CCAUGUU      \
                      UG   GGUA AUGGGC  UGG  GAA GGUACAA      A
AGUUGUGCAGAAGUAUUGAGGA  ACC^   C      C-   UU   -       GUGAAA 
.       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Mature sequence

Cbr-Mir-10-P2_5p

mirBase accession

MIMAT0001297

Sequence

0- UACCCGUAGCUCCUUGCCAUGUU -23

Get sequence

Star sequence

Cbr-Mir-10-P2_3p*

mirBase accession

None

Sequence

38- CAUGGAAGUUGGUCCGGGUACA -60

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