Mir-10-P2d1

MirGeneDB ID

Mal-Mir-10-P2d1

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b1-v2 Mal-Mir-10-P1b2 Mal-Mir-10-P1c1-v1 Mal-Mir-10-P1c1-v2 Mal-Mir-10-P1c2a-v1 Mal-Mir-10-P1c2a-v2 Mal-Mir-10-P1c2b-v1 Mal-Mir-10-P1c2b-v2 Mal-Mir-10-P1d1-v1 Mal-Mir-10-P1d1-v2 Mal-Mir-10-P2c2 Mal-Mir-10-P2d2 Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mal-Mir-10-P3c2 Mal-Mir-10-P3d1 Mal-Mir-10-P3d2

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2d Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2d Asp-Mir-10 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2d Cin-Mir-10-P2 Cja-Mir-10-P2d Cli-Mir-10-P2d Cmi-Mir-10-P2d Cpi-Mir-10-P2d Cpo-Mir-10-P2d Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2d1 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Eca-Mir-10-P2d Ete-Mir-10-P2d Gga-Mir-10-P2d Gja-Mir-10-P2d Gmo-Mir-10-P2d1 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2d Isc-Mir-10-P2 Laf-Mir-10-P2d Lan-Mir-10-P2 Lch-Mir-10-P2d Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2d Mdo-Mir-10-P2d Mgi-Mir-10-P2 Mml-Mir-10-P2d Mmr-Mir-10-P2d Mmu-Mir-10-P2d Mom-Mir-10-P2 Mun-Mir-10-P2d Neu-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2d Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2d Pau-Mir-10-P2 Pbv-Mir-10-P2d Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2d Rph-Mir-10-P2 Sha-Mir-10-P2d Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2d Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884902.1: 377234-377290 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAUGUAUGAAGUCAUCUGCUCACAGCCCUGAACCCGUAGAUCCGAACUUGUGUUAACUGACACCACAAGCUUGUAUCUACAGGUCUGCGUCUGUGCAGCUCCAACAACCUGAGCAGC

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Structure

        10         20          30        40        50        
GAUGUAUGAAGUCAUCU-   -     -|CCU  A  C      C   A      UUAAC 
                  GCU CACAG C   GA CC GUAGAU CGA CUUGUG     \
                  CGA GUGUC G   CU GG CAUCUA GUU GAACAC     U
CGACGAGUCCAACAACCU   C     U^CGU  -  A      U   C      CACAG 
     110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-10-P2d1_5p

mirBase accession

None

Sequence

0- AACCCGUAGAUCCGAACUUGUG -22

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Star sequence

Mal-Mir-10-P2d1_3p*

mirBase accession

None

Sequence

35- CAAGCUUGUAUCUACAGGUCUG -57

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