Mir-10-P2d

MirGeneDB ID

Mml-Mir-10-P2d

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-100

Paralogues

Mml-Mir-10-P1b-v1 Mml-Mir-10-P1b-v2 Mml-Mir-10-P1c-v1 Mml-Mir-10-P1c-v2 Mml-Mir-10-P2b Mml-Mir-10-P2c Mml-Mir-10-P3b Mml-Mir-10-P3c Mml-Mir-10-P3d

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2d Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2d Asp-Mir-10 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2d Cin-Mir-10-P2 Cja-Mir-10-P2d Cli-Mir-10-P2d Cmi-Mir-10-P2d Cpi-Mir-10-P2d Cpo-Mir-10-P2d Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Eca-Mir-10-P2d Ete-Mir-10-P2d Gga-Mir-10-P2d Gja-Mir-10-P2d Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2d Isc-Mir-10-P2 Laf-Mir-10-P2d Lan-Mir-10-P2 Lch-Mir-10-P2d Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2d Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mgi-Mir-10-P2 Mmr-Mir-10-P2d Mmu-Mir-10-P2d Mom-Mir-10-P2 Mun-Mir-10-P2d Neu-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2d Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2d Pau-Mir-10-P2 Pbv-Mir-10-P2d Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2d Rph-Mir-10-P2 Sha-Mir-10-P2d Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2d Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014349.1: 115181592-115181648 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2d)

Let-7-P1d CM014349.1: 115175896-115175962 [-] UCSC Ensembl
Mir-10-P2d CM014349.1: 115181592-115181648 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGAGAGAAGAUAUUGAGGCCUGUUGCCACAAACCCGUAGAUCCGAACUUGUGGUAUUAGUCCGCACAAGCUUGUGUCUAUAGGUAUGUGUCUUUUAGGCAAUCUCACAGACCUCGGG

Get precursor sequence

Structure

        10         20         30        40        50        
CGAGAGAAGAUAUUGAG-     UUGC-|   A   CG    UC   A      GUAUU 
                  GCCUG     CACA ACC  UAGA  CGA CUUGUG     \
                  CGGAU     GUGU UGG  AUCU  GUU GAACAC     A
GGGCUCCAGACACUCUAA     UUUCU^   A   AU    GU   C      GCCUG 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-10-P2d_5p

mirBase accession

MIMAT0002422

Sequence

0- AACCCGUAGAUCCGAACUUGUG -22

Get sequence

Proposed targets

TargetScanVert: mml-miR-100-5p

Star sequence

Mml-Mir-10-P2d_3p*

mirBase accession

MIMAT0026580

Sequence

35- CAAGCUUGUGUCUAUAGGUAUG -57

Get sequence

Proposed targets

TargetScanVert: mml-miR-100-3p