MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-10-P2

Family name

MIR-10 (all species)

Seed

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Rph-Mir-10-P1 Rph-Mir-10-P3 Rph-Mir-10-P5 Rph-Mir-10-P6

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2b Aca-Mir-10-P2c Aca-Mir-10-P2d Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2b Ami-Mir-10-P2c Ami-Mir-10-P2d Asp-Mir-10 Asu-Mir-10-P2o3 Asu-Mir-10-P2o4 Asu-Mir-10-P2o5 Asu-Mir-10-P2o6 Asu-Mir-10-P2o7 Asu-Mir-10-P2o8 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2b Bta-Mir-10-P2c Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2b Cfa-Mir-10-P2c Cfa-Mir-10-P2d Cin-Mir-10-P2 Cja-Mir-10-P2b Cja-Mir-10-P2c Cja-Mir-10-P2d Cli-Mir-10-P2c Cli-Mir-10-P2d Cmi-Mir-10-P2c Cmi-Mir-10-P2d Cpi-Mir-10-P2b Cpi-Mir-10-P2c Cpi-Mir-10-P2d Cpo-Mir-10-P2b Cpo-Mir-10-P2c Cpo-Mir-10-P2d Csc-Mir-10-P2r1 Csc-Mir-10-P2r2 Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2c Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Ebu-Mir-10-P2e Ebu-Mir-10-P2f Eca-Mir-10-P2b Eca-Mir-10-P2c Eca-Mir-10-P2d Efe-Mir-10-P2g Efe-Mir-10-P2h Efe-Mir-10-P2i Efe-Mir-10-P2j Efe-Mir-10-P2k Ete-Mir-10-P2b Ete-Mir-10-P2c Ete-Mir-10-P2d Gga-Mir-10-P2c Gga-Mir-10-P2d Gja-Mir-10-P2b Gja-Mir-10-P2c Gja-Mir-10-P2d Gmo-Mir-10-P2c2 Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2b Hsa-Mir-10-P2c Hsa-Mir-10-P2d Isc-Mir-10-P2 Laf-Mir-10-P2b Laf-Mir-10-P2c Laf-Mir-10-P2d Lan-Mir-10-P2 Lch-Mir-10-P2b Lch-Mir-10-P2c Lch-Mir-10-P2d Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2c Loc-Mir-10-P2d Lpo-Mir-10-P2o Lpo-Mir-10-P2p Lpo-Mir-10-P2q Mal-Mir-10-P2c2 Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mgi-Mir-10-P2 Mml-Mir-10-P2b Mml-Mir-10-P2c Mml-Mir-10-P2d Mmr-Mir-10-P2b Mmr-Mir-10-P2c Mmr-Mir-10-P2d Mmu-Mir-10-P2b Mmu-Mir-10-P2c Mmu-Mir-10-P2d Mom-Mir-10-P2 Mun-Mir-10-P2b Mun-Mir-10-P2c Mun-Mir-10-P2d Neu-Mir-10-P2b Neu-Mir-10-P2c Neu-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2b Oan-Mir-10-P2c Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2b Ocu-Mir-10-P2c Ocu-Mir-10-P2d Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2b Pab-Mir-10-P2c Pab-Mir-10-P2d Pau-Mir-10-P2 Pbv-Mir-10-P2b Pbv-Mir-10-P2c Pbv-Mir-10-P2d Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pma-Mir-10-P2o1 Pma-Mir-10-P2o2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2b Rno-Mir-10-P2c Rno-Mir-10-P2d Sha-Mir-10-P2b Sha-Mir-10-P2c Sha-Mir-10-P2d Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2b Spt-Mir-10-P2c Spt-Mir-10-P2d Spu-Mir-10-P2m Spu-Mir-10-P2n Sto-Mir-10-P2b Sto-Mir-10-P2c Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2c Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Tur-Mir-10-P2 War-Mir-10-P2s War-Mir-10-P2t Xbo-Mir-10-P2 Xbo-Mir-10-P2-as Xla-Mir-10-P2b1 Xla-Mir-10-P2b2 Xla-Mir-10-P2c3 Xla-Mir-10-P2c4 Xtr-Mir-10-P2b Xtr-Mir-10-P2c

Node of Origin (locus)

Bilateria

Node of Origin (family)

Eumetazoa

Genome context
(Ruditapes_GCA_009026015)

CM018531.1: 24992246-24992307 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GAGCAAUGUCUAAAUGUAAUCUGUUGUAUAAACCCGUAGAUCCGAACUUGUGGUUUGUAUGAUAUAUUCGCAAGCUCGUACCUACUGGUCUGUAUUGCAGGUGACAACAUAUGAUAACUGUU

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Structure

        10          20        30        40        50        60
GAGCAAUGUCUAAAUGUA--|     U     A   C    AUC   A      GUUUGUA 
                    AUCUGU GUAUA ACC GUAG   CGA CUUGUG       U
                    UGGACG UAUGU UGG CAUC   GCU GAACGC       G
UUGUCAAUAGUAUACAACAG^     U     C   U    CAU   C      UUAUAUA 
120       110       100        90        80        70

Deep sequencing

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3' NTU

No

Motifs

No

Tissue expression

-

+

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Mature sequence

Rph-Mir-10-P2_5p

mirBase accession

None

Sequence

0- AACCCGUAGAUCCGAACUUGUG -22

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Star sequence

Rph-Mir-10-P2_3p*

mirBase accession

None

Sequence

40- CAAGCUCGUACCUACUGGUCUG -62

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