Mir-10-P2c

MirGeneDB ID

Ami-Mir-10-P2c

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-99a

Paralogues

Ami-Mir-10-P1b-v1 Ami-Mir-10-P1b-v2 Ami-Mir-10-P1c-v1 Ami-Mir-10-P1c-v2 Ami-Mir-10-P1d-v1 Ami-Mir-10-P1d-v2 Ami-Mir-10-P2b Ami-Mir-10-P2d Ami-Mir-10-P3b Ami-Mir-10-P3c Ami-Mir-10-P3d

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2c Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Asp-Mir-10 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2c Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2c Cin-Mir-10-P2 Cja-Mir-10-P2c Cli-Mir-10-P2c Cmi-Mir-10-P2c Cpi-Mir-10-P2c Cpo-Mir-10-P2c Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2c Dpu-Mir-10-P2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Eca-Mir-10-P2c Ete-Mir-10-P2c Gga-Mir-10-P2c Gja-Mir-10-P2c Gmo-Mir-10-P2c2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2c Isc-Mir-10-P2 Laf-Mir-10-P2c Lan-Mir-10-P2 Lch-Mir-10-P2c Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2c Mal-Mir-10-P2c2 Mgi-Mir-10-P2 Mml-Mir-10-P2c Mmr-Mir-10-P2c Mmu-Mir-10-P2c Mom-Mir-10-P2 Mun-Mir-10-P2c Neu-Mir-10-P2c Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2c Obi-Mir-10-P2 Ocu-Mir-10-P2c Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2c Pau-Mir-10-P2 Pbv-Mir-10-P2c Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2c Rph-Mir-10-P2 Sha-Mir-10-P2c Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2c Sto-Mir-10-P2c Tca-Mir-10-P2 Tgu-Mir-10-P2c Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as Xla-Mir-10-P2c3 Xla-Mir-10-P2c4 Xtr-Mir-10-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017713645.1: 37234796-37234854 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-10-P2c)

Mir-10-P2c NW_017713645.1: 37234796-37234854 [+] UCSC
Let-7-P1c NW_017713645.1: 37235566-37235632 [+] UCSC
Mir-10-P3c NW_017713645.1: 37281665-37281726 [+] UCSC

Precursor
(pre-Mir +30nt flank)

AGAUGUUAGCUGAUGGUGCCAGUUGGCAUAAACCCGUAGAUCCGAUCUUGUGGUAAAAUACACCACACAAGCUCGCUUCUAUGGGUCUGUGUCAGUGUGGUUAUCUGGCAAAAGGUUAU

Get precursor sequence

Structure

        10         20         30        40        50         
AGAUGUUAGCUGAUGGU-    GU-|      A         UC   U      GUAAAA 
                  GCCA   UGGCAUA ACCCGUAGA  CGA CUUGUG      \
                  UGGU   ACUGUGU UGGGUAUCU  GCU GAACAC      U
UAUUGGAAAACGGUCUAU    GUG^      C         UC   C      ACCACA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

Based on the 3' DcRNA reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA.

3' NTU

Yes

Motifs

UG at 5p(-14)

Tissue expression

To

Mature sequence

Ami-Mir-10-P2c_5p

mirBase accession

MIMAT0038110

Sequence

0- AACCCGUAGAUCCGAUCUUGUG -22

Get sequence

Star sequence

Ami-Mir-10-P2c_3p*

mirBase accession

MIMAT0038111

Sequence

37- CAAGCUCGCUUCUAUGGGUCUG -59

Get sequence