MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-10-P2d

Family name MIR-10 (all species)
Seed ACCCGUA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-100
Paralogues Ami-Mir-10-P1b-v1  Ami-Mir-10-P1b-v2  Ami-Mir-10-P1c-v1  Ami-Mir-10-P1c-v2  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Ami-Mir-10-P2b  Ami-Mir-10-P2c  Ami-Mir-10-P3b  Ami-Mir-10-P3c  Ami-Mir-10-P3d 
Orthologues Aae-Mir-10-P2  Aca-Mir-10-P2d  Adi-Mir-10  Aga-Mir-10-P2  Agr-Mir-10-P2  Asp-Mir-10  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bko-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Bta-Mir-10-P2d  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cfa-Mir-10-P2d  Cin-Mir-10-P2  Cja-Mir-10-P2d  Cli-Mir-10-P2d  Cmi-Mir-10-P2d  Cpi-Mir-10-P2d  Cpo-Mir-10-P2d  Cte-Mir-10-P2  Dan-Mir-10-P2  Dgr-Mir-10-P2  Dlo-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dno-Mir-10-P2d  Dpu-Mir-10-P2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Eba-Mir-10-P2  Eca-Mir-10-P2d  Ete-Mir-10-P2d  Gga-Mir-10-P2d  Gja-Mir-10-P2d  Gmo-Mir-10-P2d1  Gmo-Mir-10-P2d2  Gpa-Mir-10-P2  Gsp-Mir-10-P2  Hru-Mir-10-P2  Hsa-Mir-10-P2d  Isc-Mir-10-P2  Laf-Mir-10-P2d  Lan-Mir-10-P2  Lch-Mir-10-P2d  Lgi-Mir-10-P2  Lhy-Mir-10-P2  Llo-Mir-10-P2  Loc-Mir-10-P2d  Mal-Mir-10-P2d1  Mal-Mir-10-P2d2  Mdo-Mir-10-P2d  Mgi-Mir-10-P2  Mml-Mir-10-P2d  Mmr-Mir-10-P2d  Mmu-Mir-10-P2d  Mom-Mir-10-P2  Mun-Mir-10-P2d  Neu-Mir-10-P2d  Npo-Mir-10-P2  Nve-Mir-10  Oan-Mir-10-P2d  Obi-Mir-10-P2  Ocu-Mir-10-P2d  Ofu-Mir-10-P2  Ovu-Mir-10-P2  Pab-Mir-10-P2d  Pau-Mir-10-P2  Pbv-Mir-10-P2d  Pca-Mir-10-P2  Pdu-Mir-10-P2  Pfl-Mir-10-P2  Ple-Mir-10-P2  Pmi-Mir-10-P2  Pve-Mir-10-P2  Rno-Mir-10-P2d  Rph-Mir-10-P2  Sha-Mir-10-P2d  Sko-Mir-10-P2  Snu-Mir-10-P2  Spt-Mir-10-P2d  Sto-Mir-10-P2d  Tca-Mir-10-P2  Tgu-Mir-10-P2d  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Tur-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709809.1: 3923387-3923443 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-10-P2d)		 Mir-10-P2d NW_017709809.1: 3923387-3923443 [+] UCSC
Let-7-P1d NW_017709809.1: 3936841-3936907 [+] UCSC
Mir-10-P3d NW_017709809.1: 3961408-3961469 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AUAAAGAAGAAAUCGAUGCCCGUUGCCACAAACCCGUAGAUCCGAACUUGUGGUGAUAUUCCACACAAGCUUGUAUCUAUAGGUAUGUGUCUUCAUGGCAAGCGCACAAAAUGUGGG
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Structure
        10         20         30        40        50        
AUAAAGAAGAAAUCGAU-   CGUUGC-|   A   CG     C   A      GUGAU 
                  GCC       CACA ACC  UAGAU CGA CUUGUG     \
                  CGG       GUGU UGG  AUCUA GUU GAACAC     A
GGGUGUAAAACACGCGAA   UACUUCU^   A   AU     U   C      ACCUU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-10-P2d_5p
mirBase accessionMIMAT0038114
Sequence 
0- AACCCGUAGAUCCGAACUUGUG -22
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Star sequence

Ami-Mir-10-P2d_3p*
mirBase accessionMIMAT0038115
Sequence 
35- CAAGCUUGUAUCUAUAGGUAUG -57
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