Mir-10-P2d

MirGeneDB ID

Aca-Mir-10-P2d

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-100

Paralogues

Aca-Mir-10-P1b-v1 Aca-Mir-10-P1b-v2 Aca-Mir-10-P1c-v1 Aca-Mir-10-P1c-v2 Aca-Mir-10-P1d-v1 Aca-Mir-10-P1d-v2 Aca-Mir-10-P2b Aca-Mir-10-P2c Aca-Mir-10-P3b Aca-Mir-10-P3c Aca-Mir-10-P3d

Orthologues

Aae-Mir-10-P2 Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2d Asp-Mir-10 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2d Cin-Mir-10-P2 Cja-Mir-10-P2d Cli-Mir-10-P2d Cmi-Mir-10-P2d Cpi-Mir-10-P2d Cpo-Mir-10-P2d Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Eca-Mir-10-P2d Ete-Mir-10-P2d Gga-Mir-10-P2d Gja-Mir-10-P2d Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2d Isc-Mir-10-P2 Laf-Mir-10-P2d Lan-Mir-10-P2 Lch-Mir-10-P2d Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2d Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mgi-Mir-10-P2 Mml-Mir-10-P2d Mmr-Mir-10-P2d Mmu-Mir-10-P2d Mom-Mir-10-P2 Mun-Mir-10-P2d Neu-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2d Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2d Pau-Mir-10-P2 Pbv-Mir-10-P2d Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2d Rph-Mir-10-P2 Sha-Mir-10-P2d Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2d Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(anoCar2)

LGa: 2624872-2624928 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2d)

Mir-10-P3d LGa: 2579072-2579133 [-] UCSC Ensembl
Mir-10-P2d LGa: 2624872-2624928 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAAGAAGAUCUUCCUGCUAGUUGCCACAAACCCGUAGAUCCGAACUUGUGCUUCUAUGUUACACAAGCUUGUGUCUAUAGGUAUGUGUCUGCUUGGCCAAUUCACAAAACGUGGU

Get precursor sequence

Structure

        10         20         30        40        50        
AAAAAGAAGAUCUUCCU-   -|  UGC    A   CG    UC   A      CUUCU 
                  GCU AGU   CACA ACC  UAGA  CGA CUUGUG     \
                  CGG UCG   GUGU UGG  AUCU  GUU GAACAC     A
UGGUGCAAAACACUUAAC   U^  UCU    A   AU    GU   C      AUUGU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

Based on the 3' DcRNA reads in human (P2b) and platypus (P2c) it appears that this is a Group 2 miRNA.

3' NTU

Yes

Motifs

UG at 5p(-14)

Tissue expression

Sk	Ta	Ta	To	Wh

Mature sequence

Aca-Mir-10-P2d_5p

mirBase accession

MIMAT0021709

Sequence

0- AACCCGUAGAUCCGAACUUGUG -22

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Star sequence

Aca-Mir-10-P2d_3p*

mirBase accession

None

Sequence

35- CAAGCUUGUGUCUAUAGGUAUG -57

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