Mir-10-P2d

MirGeneDB ID

Cpi-Mir-10-P2d

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-100

Paralogues

Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v2 Cpi-Mir-10-P1c-v1 Cpi-Mir-10-P1c-v2 Cpi-Mir-10-P1d-v1 Cpi-Mir-10-P1d-v2 Cpi-Mir-10-P2b Cpi-Mir-10-P2c Cpi-Mir-10-P3b Cpi-Mir-10-P3c Cpi-Mir-10-P3d

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2d Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2d Asp-Mir-10 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2d Cin-Mir-10-P2 Cja-Mir-10-P2d Cli-Mir-10-P2d Cmi-Mir-10-P2d Cpo-Mir-10-P2d Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Eca-Mir-10-P2d Ete-Mir-10-P2d Gga-Mir-10-P2d Gja-Mir-10-P2d Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2d Isc-Mir-10-P2 Laf-Mir-10-P2d Lan-Mir-10-P2 Lch-Mir-10-P2d Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2d Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mgi-Mir-10-P2 Mml-Mir-10-P2d Mmr-Mir-10-P2d Mmu-Mir-10-P2d Mom-Mir-10-P2 Mun-Mir-10-P2d Neu-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2d Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2d Pau-Mir-10-P2 Pbv-Mir-10-P2d Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2d Rph-Mir-10-P2 Sha-Mir-10-P2d Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2d Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(chrPic1)

JH584755: 1817175-1817231 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2d)

Mir-10-P2d JH584755: 1817175-1817231 [+] UCSC Ensembl
Let-7-P1d JH584755: 1827954-1828020 [+] UCSC Ensembl
Mir-10-P3d JH584755: 1851132-1851193 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAGGAAGAGAUCAAUGCCCGUUGCCACAAACCCGUAGAUCCGAACUUGUGGUCAUAUUCCACACAAGCUUGUAUCUAUAGGUAUGUGUCUGCAUGGCAAAUGCACAAAACCUGGA

Get precursor sequence

Structure

        10         20           30        40        50        
AAAAGGAAGAGAUCAAU-   CGU   ---|   A   CG     C   A      GUCAU 
                  GCC   UGC   CACA ACC  UAGAU CGA CUUGUG     \
                  CGG   ACG   GUGU UGG  AUCUA GUU GAACAC     A
AGGUCCAAAACACGUAAA   U--   UCU^   A   AU     U   C      ACCUU 
     110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Te	Te	Te	To

Mature sequence

Cpi-Mir-10-P2d_5p

mirBase accession

MIMAT0037714

Sequence

0- AACCCGUAGAUCCGAACUUGUG -22

Get sequence

Star sequence

Cpi-Mir-10-P2d_3p*

mirBase accession

MIMAT0037715

Sequence

35- CAAGCUUGUAUCUAUAGGUAUG -57

Get sequence