Mir-10-P2d

MirGeneDB ID

Gga-Mir-10-P2d

Family name

MIR-10 (all species)

Seed

ACCCGUA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-100

Paralogues

Gga-Mir-10-P1b-v1 Gga-Mir-10-P1b-v2 Gga-Mir-10-P1c-v1 Gga-Mir-10-P1c-v2 Gga-Mir-10-P1d-v1 Gga-Mir-10-P1d-v2 Gga-Mir-10-P2c Gga-Mir-10-P3c Gga-Mir-10-P3d

Orthologues

Aae-Mir-10-P2 Aca-Mir-10-P2d Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Ami-Mir-10-P2d Asp-Mir-10 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Bta-Mir-10-P2d Cbr-Mir-10-P2 Cel-Mir-10-P2 Cfa-Mir-10-P2d Cin-Mir-10-P2 Cja-Mir-10-P2d Cli-Mir-10-P2d Cmi-Mir-10-P2d Cpi-Mir-10-P2d Cpo-Mir-10-P2d Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dno-Mir-10-P2d Dpu-Mir-10-P2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Eca-Mir-10-P2d Ete-Mir-10-P2d Gja-Mir-10-P2d Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Hsa-Mir-10-P2d Isc-Mir-10-P2 Laf-Mir-10-P2d Lan-Mir-10-P2 Lch-Mir-10-P2d Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Loc-Mir-10-P2d Mal-Mir-10-P2d1 Mal-Mir-10-P2d2 Mdo-Mir-10-P2d Mgi-Mir-10-P2 Mml-Mir-10-P2d Mmr-Mir-10-P2d Mmu-Mir-10-P2d Mom-Mir-10-P2 Mun-Mir-10-P2d Neu-Mir-10-P2d Npo-Mir-10-P2 Nve-Mir-10 Oan-Mir-10-P2d Obi-Mir-10-P2 Ocu-Mir-10-P2d Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pab-Mir-10-P2d Pau-Mir-10-P2 Pbv-Mir-10-P2d Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rno-Mir-10-P2d Rph-Mir-10-P2 Sha-Mir-10-P2d Sko-Mir-10-P2 Snu-Mir-10-P2 Spt-Mir-10-P2d Sto-Mir-10-P2d Tca-Mir-10-P2 Tgu-Mir-10-P2d Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(Gallus_gallus.GRCg6a)

24: 3364571-3364627 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2d)

Mir-10-P2d 24: 3364571-3364627 [+] UCSC Ensembl
Let-7-P1d 24: 3372662-3372728 [+] UCSC Ensembl
Mir-10-P3d 24: 3390291-3390352 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGCAGAAGAGACCCAUGCCUGUUGCCACAAACCCGUAGAUCCGAACUUGUGGUCAUAUUCCACACAAGCUUGUAUCUAUAGGUAUGUGUCUGUCUGGCAAGUGCACAAAGUGUUGU

Get precursor sequence

Structure

        10         20         30        40        50        
UUGCAGAAGAGACCCAU-   UGUUGC-|   A   CG     C   A      GUCAU 
                  GCC       CACA ACC  UAGAU CGA CUUGUG     \
                  CGG       GUGU UGG  AUCUA GUU GAACAC     A
UGUUGUGAAACACGUGAA   UCUGUCU^   A   AU     U   C      ACCUU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-10-P2d_5p

mirBase accession

MIMAT0001178

Sequence

0- AACCCGUAGAUCCGAACUUGUG -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-100-5p
miRDB: MIMAT0001178

Star sequence

Gga-Mir-10-P2d_3p*

mirBase accession

MIMAT0026539

Sequence

35- CAAGCUUGUAUCUAUAGGUAUG -57

Get sequence

Proposed targets

TargetScanVert: gga-miR-100-3p
miRDB: MIMAT0026539