Mir-10-P1b-v1

MirGeneDB ID

Gga-Mir-10-P1b-v1

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-10b

Paralogues

Gga-Mir-10-P1b-v2 Gga-Mir-10-P1c-v1 Gga-Mir-10-P1c-v2 Gga-Mir-10-P1d-v1 Gga-Mir-10-P1d-v2 Gga-Mir-10-P2c Gga-Mir-10-P2d Gga-Mir-10-P3c Gga-Mir-10-P3d

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1b-v1 Aca-Mir-10-P1b-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Ami-Mir-10-P1b-v1 Ami-Mir-10-P1b-v2 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Bta-Mir-10-P1b-v1 Bta-Mir-10-P1b-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cfa-Mir-10-P1b-v2 Cja-Mir-10-P1b-v1 Cja-Mir-10-P1b-v2 Cli-Mir-10-P1b-v1 Cli-Mir-10-P1b-v2 Cmi-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v2 Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v2 Cpo-Mir-10-P1b-v1 Cpo-Mir-10-P1b-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dno-Mir-10-P1b-v2 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b1-v2 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1b2-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Eca-Mir-10-P1b-v1 Eca-Mir-10-P1b-v2 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1b-v1 Ete-Mir-10-P1b-v2 Gja-Mir-10-P1b-v1 Gja-Mir-10-P1b-v2 Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b1-v2 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1b2-v2 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hmi-Mir-10-P1b Hru-Mir-10-P1 Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Laf-Mir-10-P1b Lch-Mir-10-P1b Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1b-v1 Loc-Mir-10-P1b-v2 Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b1-v2 Mal-Mir-10-P1b2 Mdo-Mir-10-P1b-v1 Mdo-Mir-10-P1b-v2 Mgi-Mir-10-P1 Mml-Mir-10-P1b-v1 Mml-Mir-10-P1b-v2 Mmr-Mir-10-P1b-v1 Mmr-Mir-10-P1b-v2 Mmu-Mir-10-P1b-v1 Mmu-Mir-10-P1b-v2 Mom-Mir-10-P1 Mun-Mir-10-P1b-v1 Mun-Mir-10-P1b-v2 Neu-Mir-10-P1b-v1 Neu-Mir-10-P1b-v2 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Oan-Mir-10-P1b-v2 Ocu-Mir-10-P1b-v1 Ocu-Mir-10-P1b-v2 Ofu-Mir-10-P1 Pab-Mir-10-P1b-v1 Pab-Mir-10-P1b-v2 Pau-Mir-10-P1 Pbv-Mir-10-P1b-v1 Pbv-Mir-10-P1b-v2 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1b-v1 Rno-Mir-10-P1b-v2 Rph-Mir-10-P1 Sha-Mir-10-P1b-v1 Sha-Mir-10-P1b-v2 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spt-Mir-10-P1b Spu-Mir-10-P1 Sto-Mir-10-P1b-v1 Sto-Mir-10-P1b-v2 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tgu-Mir-10-P1b-v1 Tgu-Mir-10-P1b-v2 Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b1-v2 Tni-Mir-10-P1b2 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b3-v2 Xla-Mir-10-P1b4-v1 Xla-Mir-10-P1b4-v2 Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1b-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(Gallus_gallus.GRCg6a)

7: 16278929-16278990 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1b-v1)

Mir-10-P1b-v1 7: 16278929-16278990 [-] UCSC Ensembl
Mir-10-P1b-v2 7: 16278930-16278989 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAACAGAACGUUAUUACGUUGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGAUAUUCAUAUAGUCACAGAUUCGAUUCUAGGGGAAUAUAUGGUCGAUGCAAAAACUUCACCUUUCUG

Get precursor sequence

Structure

        10          20        30        40        50        60 
AAAACAGAACGUUAUUA--|    U        A    G     C         GUGAUAUU 
                   CGUUG CUAUAUAU CCCU UAGAA CGAAUUUGU        \
                   GUAGC GGUAUAUA GGGG AUCUU GCUUAGACA        C
GUCUUUCCACUUCAAAAAC^    U        A    -     A         CUGAUAUA 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-10-P1b-v1_5p

mirBase accession

MIMAT0001148

Sequence

0- UACCCUGUAGAACCGAAUUUGU -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-10b-5p
miRDB: MIMAT0001148

Star sequence

Gga-Mir-10-P1b-v1_3p*

mirBase accession

MIMAT0026521

Sequence

41- AGAUUCGAUUCUAGGGGAAUA -62

Get sequence

Proposed targets

TargetScanVert: gga-miR-10b-3p
miRDB: MIMAT0026521