Mir-10-P1

MirGeneDB ID

Sma-Mir-10-P1

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

sma-mir-10

Paralogues

Sma-Mir-10-P3o3 Sma-Mir-10-P3o4 Sma-Mir-10-P3o5

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1b-v1 Aca-Mir-10-P1b-v2 Aca-Mir-10-P1c-v1 Aca-Mir-10-P1c-v2 Aca-Mir-10-P1d-v1 Aca-Mir-10-P1d-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Ami-Mir-10-P1b-v1 Ami-Mir-10-P1b-v2 Ami-Mir-10-P1c-v1 Ami-Mir-10-P1c-v2 Ami-Mir-10-P1d-v1 Ami-Mir-10-P1d-v2 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Bta-Mir-10-P1b-v1 Bta-Mir-10-P1b-v2 Bta-Mir-10-P1c-v1 Bta-Mir-10-P1c-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cfa-Mir-10-P1b-v2 Cfa-Mir-10-P1c-v1 Cfa-Mir-10-P1c-v2 Cja-Mir-10-P1b-v1 Cja-Mir-10-P1b-v2 Cja-Mir-10-P1c-v1 Cja-Mir-10-P1c-v2 Cli-Mir-10-P1b-v1 Cli-Mir-10-P1b-v2 Cli-Mir-10-P1c-v1 Cli-Mir-10-P1c-v2 Cli-Mir-10-P1d-v1 Cli-Mir-10-P1d-v2 Cmi-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v2 Cmi-Mir-10-P1c-v1 Cmi-Mir-10-P1c-v2 Cmi-Mir-10-P1d-v1 Cmi-Mir-10-P1d-v2 Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v2 Cpi-Mir-10-P1c-v1 Cpi-Mir-10-P1c-v2 Cpi-Mir-10-P1d-v1 Cpi-Mir-10-P1d-v2 Cpo-Mir-10-P1b-v1 Cpo-Mir-10-P1b-v2 Cpo-Mir-10-P1c-v1 Cpo-Mir-10-P1c-v2 Csc-Mir-10-P1q1-v1 Csc-Mir-10-P1q1-v2 Csc-Mir-10-P1q2-v1 Csc-Mir-10-P1q2-v2 Csc-Mir-10-P1q3-v1 Csc-Mir-10-P1q3-v2 Csc-Mir-10-P1r Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dno-Mir-10-P1b-v2 Dno-Mir-10-P1c-v1 Dno-Mir-10-P1c-v2 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b1-v2 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1b2-v2 Dre-Mir-10-P1c1-v1 Dre-Mir-10-P1c1-v2 Dre-Mir-10-P1c2-v1 Dre-Mir-10-P1c2-v2 Dre-Mir-10-P1d1-v1 Dre-Mir-10-P1d1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Ebu-Mir-10-P1e Ebu-Mir-10-P1f Eca-Mir-10-P1b-v1 Eca-Mir-10-P1b-v2 Eca-Mir-10-P1c-v1 Eca-Mir-10-P1c-v2 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1b-v1 Ete-Mir-10-P1b-v2 Ete-Mir-10-P1c-v1 Ete-Mir-10-P1c-v2 Gga-Mir-10-P1b-v1 Gga-Mir-10-P1b-v2 Gga-Mir-10-P1c-v1 Gga-Mir-10-P1c-v2 Gga-Mir-10-P1d-v1 Gga-Mir-10-P1d-v2 Gja-Mir-10-P1b-v1 Gja-Mir-10-P1b-v2 Gja-Mir-10-P1c-v1 Gja-Mir-10-P1c-v2 Gja-Mir-10-P1d-v1 Gja-Mir-10-P1d-v2 Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b1-v2 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1b2-v2 Gmo-Mir-10-P1c1-v1 Gmo-Mir-10-P1c1-v2 Gmo-Mir-10-P1c2-v1 Gmo-Mir-10-P1c2-v2 Gmo-Mir-10-P1d1-v1 Gmo-Mir-10-P1d1-v2 Gpa-Mir-10-P1 Gsa-Mir-10-P1o6 Gsa-Mir-10-P1o7 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hmi-Mir-10-P1a Hmi-Mir-10-P1b Hru-Mir-10-P1 Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Hsa-Mir-10-P1c-v1 Hsa-Mir-10-P1c-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Laf-Mir-10-P1b Laf-Mir-10-P1c-v1 Laf-Mir-10-P1c-v2 Lan-Mir-10-P1u Lan-Mir-10-P1v Lch-Mir-10-P1b Lch-Mir-10-P1c Lch-Mir-10-P1d Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1b-v1 Loc-Mir-10-P1b-v2 Loc-Mir-10-P1c-v1 Loc-Mir-10-P1c-v2 Loc-Mir-10-P1d-v1 Loc-Mir-10-P1d-v2 Lpo-Mir-10-P1k-v1 Lpo-Mir-10-P1k-v2 Lpo-Mir-10-P1l-v1 Lpo-Mir-10-P1l-v2 Lpo-Mir-10-P1m-v1 Lpo-Mir-10-P1m-v2 Lpo-Mir-10-P1n-v1 Lpo-Mir-10-P1n-v2 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1o-v2 Lpo-Mir-10-P1p-v1 Lpo-Mir-10-P1p-v2 Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b1-v2 Mal-Mir-10-P1b2 Mal-Mir-10-P1c1-v1 Mal-Mir-10-P1c1-v2 Mal-Mir-10-P1c2a-v1 Mal-Mir-10-P1c2a-v2 Mal-Mir-10-P1c2b-v1 Mal-Mir-10-P1c2b-v2 Mal-Mir-10-P1d1-v1 Mal-Mir-10-P1d1-v2 Mdo-Mir-10-P1b-v1 Mdo-Mir-10-P1b-v2 Mdo-Mir-10-P1c-v1 Mdo-Mir-10-P1c-v2 Mgi-Mir-10-P1 Mml-Mir-10-P1b-v1 Mml-Mir-10-P1b-v2 Mml-Mir-10-P1c-v1 Mml-Mir-10-P1c-v2 Mmr-Mir-10-P1b-v1 Mmr-Mir-10-P1b-v2 Mmr-Mir-10-P1c-v1 Mmr-Mir-10-P1c-v2 Mmu-Mir-10-P1b-v1 Mmu-Mir-10-P1b-v2 Mmu-Mir-10-P1c-v1 Mmu-Mir-10-P1c-v2 Mom-Mir-10-P1 Mun-Mir-10-P1b-v1 Mun-Mir-10-P1b-v2 Mun-Mir-10-P1c-v1 Mun-Mir-10-P1c-v2 Mun-Mir-10-P1d-v1 Mun-Mir-10-P1d-v2 Neu-Mir-10-P1b-v1 Neu-Mir-10-P1b-v2 Neu-Mir-10-P1c-v1 Neu-Mir-10-P1c-v2 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Oan-Mir-10-P1b-v2 Oan-Mir-10-P1c-v1 Oan-Mir-10-P1c-v2 Ocu-Mir-10-P1b-v1 Ocu-Mir-10-P1b-v2 Ocu-Mir-10-P1c-v1 Ocu-Mir-10-P1c-v2 Ofu-Mir-10-P1 Pab-Mir-10-P1b-v1 Pab-Mir-10-P1b-v2 Pab-Mir-10-P1c-v1 Pab-Mir-10-P1c-v2 Pau-Mir-10-P1 Pbv-Mir-10-P1b-v1 Pbv-Mir-10-P1b-v2 Pbv-Mir-10-P1c-v1 Pbv-Mir-10-P1c-v2 Pbv-Mir-10-P1d-v1 Pbv-Mir-10-P1d-v2 Pca-Mir-10-P1 Pcr-Mir-10-P1o4-v1 Pcr-Mir-10-P1o4-v2 Pcr-Mir-10-P1o5 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pma-Mir-10-P1o1 Pma-Mir-10-P1o2 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1b-v1 Rno-Mir-10-P1b-v2 Rno-Mir-10-P1c-v1 Rno-Mir-10-P1c-v2 Rph-Mir-10-P1 Sha-Mir-10-P1b-v1 Sha-Mir-10-P1b-v2 Sha-Mir-10-P1c-v1 Sha-Mir-10-P1c-v2 Sko-Mir-10-P1 Sme-Mir-10-P1s Sme-Mir-10-P1t Snu-Mir-10-P1 Spt-Mir-10-P1b Spt-Mir-10-P1c Spu-Mir-10-P1 Sro-Mir-10-P1w Sro-Mir-10-P1x Sto-Mir-10-P1b-v1 Sto-Mir-10-P1b-v2 Sto-Mir-10-P1c-v1 Sto-Mir-10-P1c-v2 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tgu-Mir-10-P1b-v1 Tgu-Mir-10-P1b-v2 Tgu-Mir-10-P1c-v1 Tgu-Mir-10-P1c-v2 Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b1-v2 Tni-Mir-10-P1b2 Tni-Mir-10-P1c1-v1 Tni-Mir-10-P1c1-v2 Tni-Mir-10-P1c2-v1 Tni-Mir-10-P1c2-v2 Tni-Mir-10-P1d1-v1 Tni-Mir-10-P1d1-v2 Tur-Mir-10-P1y Tur-Mir-10-P1z-v1 Tur-Mir-10-P1z-v2 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b3-v2 Xla-Mir-10-P1b4-v1 Xla-Mir-10-P1b4-v2 Xla-Mir-10-P1c3-v1 Xla-Mir-10-P1c3-v2 Xla-Mir-10-P1c4-v1 Xla-Mir-10-P1c4-v2 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d3-v2 Xla-Mir-10-P1d4-v1 Xla-Mir-10-P1d4-v2 Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1b-v2 Xtr-Mir-10-P1c-v1 Xtr-Mir-10-P1c-v2 Xtr-Mir-10-P1d-v1 Xtr-Mir-10-P1d-v2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Eumetazoa

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601627.3: 33574386-33574443 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAUACUUAAAUAAUUUGAUUCCUCAGUAUGAACCCUGUAGACCCGAGUUUGGAUGCAGUCAGAUGCAAAUUCGAGUCUAUAAGGAAAAAUACUUUGGAAGUAGACAUCUGAUAUUUGA

Get precursor sequence

Structure

        10         20        30         40        50        
GAUACUUAAAUAAUUUGA-    UC     GAA-| C       C        GAUGCA 
                   UUCC  AGUAU    CC UGUAGAC CGAGUUUG      G
                   AAGG  UCAUA    GG AUAUCUG GCUUAAAC      U
AGUUUAUAGUCUACAGAUG    UU     AAAA^ A       A        GUAGAC 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr

Mature sequence

Sma-Mir-10-P1_5p

mirBase accession

MIMAT0025023

Sequence

0- AACCCUGUAGACCCGAGUUUGG -22

Get sequence

Star sequence

Sma-Mir-10-P1_3p* (predicted)

mirBase accession

MIMAT0025024

Sequence

36- AAAUUCGAGUCUAUAAGGAAAA -58

Get sequence