MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-10-P1d-v1

Family name MIR-10 (all species)
Seed ACCCUGU
Species Chicken (Gallus gallus)
MiRBase ID
Paralogues Gga-Mir-10-P1b-v1  Gga-Mir-10-P1b-v2  Gga-Mir-10-P1c-v1  Gga-Mir-10-P1c-v2  Gga-Mir-10-P1d-v2  Gga-Mir-10-P2c  Gga-Mir-10-P2d  Gga-Mir-10-P3c  Gga-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1d-v1  Aca-Mir-10-P1d-v2  Adi-Mir-10  Aga-Mir-10-P1-v1  Aga-Mir-10-P1-v2  Agr-Mir-10-P1  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cli-Mir-10-P1d-v1  Cli-Mir-10-P1d-v2  Cmi-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dlo-Mir-10-P1-v2  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gja-Mir-10-P1d-v1  Gja-Mir-10-P1d-v2  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P1d1-v2  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1d-v1  Loc-Mir-10-P1d-v2  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P1d1-v2  Mgi-Mir-10-P1  Mom-Mir-10-P1  Mun-Mir-10-P1d-v1  Mun-Mir-10-P1d-v2  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pbv-Mir-10-P1d-v1  Pbv-Mir-10-P1d-v2  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P1d1-v2  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d3-v2  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P1d4-v2  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P1d-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(Gallus_gallus.GRCg6a)
Precursor
(pre-Mir +30nt flank)
UACCCUGUAGACUCGAAUUUGUGUGAGCGUCUCCGAGUCGCAAAUUCGUCUCUAGGGGAAUA
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Structure
         10        20        30 
UAC-|  G    CU          UGAG  U 
    CCU UAGA  CGAAUUUGUG    CG C
    GGG AUCU  GCUUAAACGC    GC U
AUAA^  G    CU          UGA-  C 
 60        50        40
Deep sequencing
CommentThere is a one nt deletion in the 3p read in the genome sequence relative to what is shown here. However both the read data and phylogenetic conservation suggest that this is the correct sequence.
3' NTU No
MotifsNo
Mature sequence

Gga-Mir-10-P1d-v1_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGACUCGAAUUUGU -22
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Star sequence

Gga-Mir-10-P1d-v1_3p*
mirBase accessionNone
Sequence 
41- AAAUUCGUCUCUAGGGGAAUA -62
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