Mir-10-P1d-v1

MirGeneDB ID

Cmi-Mir-10-P1d-v1

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v2 Cmi-Mir-10-P1c-v1 Cmi-Mir-10-P1c-v2 Cmi-Mir-10-P1d-v2 Cmi-Mir-10-P2c Cmi-Mir-10-P2d Cmi-Mir-10-P3d

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1d-v1 Aca-Mir-10-P1d-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Ami-Mir-10-P1d-v1 Ami-Mir-10-P1d-v2 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cli-Mir-10-P1d-v1 Cli-Mir-10-P1d-v2 Cpi-Mir-10-P1d-v1 Cpi-Mir-10-P1d-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dre-Mir-10-P1d1-v1 Dre-Mir-10-P1d1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Efe-Mir-10-P1 Egr-Mir-10-P1 Gga-Mir-10-P1d-v1 Gga-Mir-10-P1d-v2 Gja-Mir-10-P1d-v1 Gja-Mir-10-P1d-v2 Gmo-Mir-10-P1d1-v1 Gmo-Mir-10-P1d1-v2 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hru-Mir-10-P1 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lch-Mir-10-P1d Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1d-v1 Loc-Mir-10-P1d-v2 Mal-Mir-10-P1d1-v1 Mal-Mir-10-P1d1-v2 Mgi-Mir-10-P1 Mom-Mir-10-P1 Mun-Mir-10-P1d-v1 Mun-Mir-10-P1d-v2 Npo-Mir-10-P1 Nve-Mir-10 Ofu-Mir-10-P1 Pau-Mir-10-P1 Pbv-Mir-10-P1d-v1 Pbv-Mir-10-P1d-v2 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tni-Mir-10-P1d1-v1 Tni-Mir-10-P1d1-v2 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d3-v2 Xla-Mir-10-P1d4-v1 Xla-Mir-10-P1d4-v2 Xtr-Mir-10-P1d-v1 Xtr-Mir-10-P1d-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636119.1: 284355-284416 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCAGGCUAUUUCAAGCAGUCGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUUAGCAGUUUGUAAUCACAAAUUCGUCUCUGAGGGAGUAUAUGGUCGAUGUCAAGACAACAGCUUUAGC

Get precursor sequence

Structure

        10          20        30        40        50        60 
CGCAGGCUAUUUCAAGCA--|   U        A    G    AC          UUAGCAG 
                    GUCG CUAUAUAU CCCU UAGA  CGAAUUUGUG       \
                    UAGC GGUAUAUG GGGA GUCU  GCUUAAACAC       U
CGAUUUCGACAACAGAACUG^   U        A    -    CU          UAAUGUU 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-10-P1d-v1_5p

mirBase accession

None

Sequence

0- UACCCUGUAGAACCGAAUUUGUG -23

Get sequence

Star sequence

Cmi-Mir-10-P1d-v1_3p*

mirBase accession

None

Sequence

40- CAAAUUCGUCUCUGAGGGAGUA -62

Get sequence