Mir-10-P1d-v2

MirGeneDB ID

Loc-Mir-10-P1d-v2

Family name

MIR-10 (all species)

Seed

CCCUGUA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-10-P1b-v1 Loc-Mir-10-P1b-v2 Loc-Mir-10-P1c-v1 Loc-Mir-10-P1c-v2 Loc-Mir-10-P1d-v1 Loc-Mir-10-P2c Loc-Mir-10-P2d Loc-Mir-10-P3b Loc-Mir-10-P3c Loc-Mir-10-P3d

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1d-v1 Aca-Mir-10-P1d-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Ami-Mir-10-P1d-v1 Ami-Mir-10-P1d-v2 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cli-Mir-10-P1d-v1 Cli-Mir-10-P1d-v2 Cmi-Mir-10-P1d-v1 Cmi-Mir-10-P1d-v2 Cpi-Mir-10-P1d-v1 Cpi-Mir-10-P1d-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dre-Mir-10-P1d1-v1 Dre-Mir-10-P1d1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Efe-Mir-10-P1 Egr-Mir-10-P1 Gga-Mir-10-P1d-v1 Gga-Mir-10-P1d-v2 Gja-Mir-10-P1d-v1 Gja-Mir-10-P1d-v2 Gmo-Mir-10-P1d1-v1 Gmo-Mir-10-P1d1-v2 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hru-Mir-10-P1 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lch-Mir-10-P1d Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Mal-Mir-10-P1d1-v1 Mal-Mir-10-P1d1-v2 Mgi-Mir-10-P1 Mom-Mir-10-P1 Mun-Mir-10-P1d-v1 Mun-Mir-10-P1d-v2 Npo-Mir-10-P1 Nve-Mir-10 Ofu-Mir-10-P1 Pau-Mir-10-P1 Pbv-Mir-10-P1d-v1 Pbv-Mir-10-P1d-v2 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tni-Mir-10-P1d1-v1 Tni-Mir-10-P1d1-v2 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d3-v2 Xla-Mir-10-P1d4-v1 Xla-Mir-10-P1d4-v2 Xtr-Mir-10-P1d-v1 Xtr-Mir-10-P1d-v2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(LepOcu1)

LG4: 15933792-15933850 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CUUUCCUACCCUCAUCAGUCGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGAGCAGCAAAAAUCGCAAAUUCGUCUCUAGGGGAAUACAUGGGCGAUGCCAAUACCGCAGUGGCAC

Get precursor sequence

Structure

        10          20        30        40        50         
CUUUCCUACCCUCAUCA--|        A   A    G    AC          UGAGCA 
                   GUCGUCUAU UGU CCCU UAGA  CGAAUUUGUG      G
                   UAGCGGGUA AUA GGGG AUCU  GCUUAAACGC      C
CACGGUGACGCCAUAACCG^        C   A    -    CU          UAAAAA 
       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-10-P1d-v2_5p

mirBase accession

None

Sequence

0- ACCCUGUAGAACCGAAUUUGUGU -23

Get sequence

Star sequence

Loc-Mir-10-P1d-v2_3p*

mirBase accession

None

Sequence

37- GCAAAUUCGUCUCUAGGGGAAU -59

Get sequence