Mir-10-P1d4-v1

MirGeneDB ID

Xla-Mir-10-P1d4-v1

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b3-v2 Xla-Mir-10-P1b4-v1 Xla-Mir-10-P1b4-v2 Xla-Mir-10-P1c3-v1 Xla-Mir-10-P1c3-v2 Xla-Mir-10-P1c4-v1 Xla-Mir-10-P1c4-v2 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d3-v2 Xla-Mir-10-P1d4-v2 Xla-Mir-10-P2b1 Xla-Mir-10-P2b2 Xla-Mir-10-P2c3 Xla-Mir-10-P2c4 Xla-Mir-10-P3b Xla-Mir-10-P3c3 Xla-Mir-10-P3c4 Xla-Mir-10-P3d3 Xla-Mir-10-P3d4

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1d-v1 Aca-Mir-10-P1d-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Ami-Mir-10-P1d-v1 Ami-Mir-10-P1d-v2 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cli-Mir-10-P1d-v1 Cli-Mir-10-P1d-v2 Cmi-Mir-10-P1d-v1 Cmi-Mir-10-P1d-v2 Cpi-Mir-10-P1d-v1 Cpi-Mir-10-P1d-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Efe-Mir-10-P1 Egr-Mir-10-P1 Gga-Mir-10-P1d-v1 Gga-Mir-10-P1d-v2 Gja-Mir-10-P1d-v1 Gja-Mir-10-P1d-v2 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hru-Mir-10-P1 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lch-Mir-10-P1d Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1d-v1 Loc-Mir-10-P1d-v2 Mgi-Mir-10-P1 Mom-Mir-10-P1 Mun-Mir-10-P1d-v1 Mun-Mir-10-P1d-v2 Npo-Mir-10-P1 Nve-Mir-10 Ofu-Mir-10-P1 Pau-Mir-10-P1 Pbv-Mir-10-P1d-v1 Pbv-Mir-10-P1d-v2 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 War-Mir-10-P1 Xbo-Mir-10-P1 Xtr-Mir-10-P1d-v1 Xtr-Mir-10-P1d-v2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Eumetazoa

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 128693658-128693716 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCUACCAGAUAUAAAGAGGCGCUUAUAUGCACCCUGUAGAAUCGAAUUUGUGUGAGUUCUGAGCCACAGAUUCGUCUCUAGGGGGGUAUAUGGGUGAUGCUACAGACUUCUUUCUCUA

Get precursor sequence

Structure

        10        20          30        40        50         
AUCUACCAGAUAUAAAGAGG--|          A    G    AU          UGAGU 
                      CGCUUAUAUGC CCCU UAGA  CGAAUUUGUG     U
                      GUGGGUAUAUG GGGG AUCU  GCUUAGACAC     C
AUCUCUUUCUUCAGACAUCGUA^          -    G    CU          CGAGU 
       110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-10-P1d4-v1_5p

mirBase accession

None

Sequence

0- CACCCUGUAGAAUCGAAUUUGUG -23

Get sequence

Star sequence

Xla-Mir-10-P1d4-v1_3p*

mirBase accession

None

Sequence

37- CAGAUUCGUCUCUAGGGGGGUA -59

Get sequence