MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-10-P1d1-v1

Family name MIR-10 (all species)
Seed ACCCUGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-10b-1
Paralogues Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b1-v2  Tni-Mir-10-P1b2  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c1-v2  Tni-Mir-10-P1c2-v1  Tni-Mir-10-P1c2-v2  Tni-Mir-10-P1d1-v2  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Tni-Mir-10-P3b2  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1d-v1  Aca-Mir-10-P1d-v2  Adi-Mir-10  Aga-Mir-10-P1-v1  Aga-Mir-10-P1-v2  Agr-Mir-10-P1  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cli-Mir-10-P1d-v1  Cli-Mir-10-P1d-v2  Cmi-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dlo-Mir-10-P1-v2  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gga-Mir-10-P1d-v1  Gga-Mir-10-P1d-v2  Gja-Mir-10-P1d-v1  Gja-Mir-10-P1d-v2  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P1d1-v2  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1d-v1  Loc-Mir-10-P1d-v2  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P1d1-v2  Mgi-Mir-10-P1  Mom-Mir-10-P1  Mun-Mir-10-P1d-v1  Mun-Mir-10-P1d-v2  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pbv-Mir-10-P1d-v1  Pbv-Mir-10-P1d-v2  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P1d-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 9: 4255306-4255366 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1d1-v1)		 Mir-196-P4a3 9: 4223649-4223707 [+] UCSC Ensembl
Mir-10-P1d1-v1 9: 4255306-4255366 [+] UCSC Ensembl
Mir-10-P1d1-v2 9: 4255307-4255365 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGGCAGUUUACACGUUAGUUGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGAGUUCAGACAGUCACAAGUACGUCUCUACAGGAAUACAUGGGCAACUGAAAAUCCACAGCGGCCAC
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Structure
        10          20        30        40        50        60
AGGGCAGUUUACACGUU--|         A   AC        AC  A      GUGAGUU 
                   AGUUGUCUAU UGU  CCUGUAGA  CG AUUUGU       C
                   UCAACGGGUA AUA  GGACAUCU  GC UGAACA       A
CACCGGCGACACCUAAAAG^         C   A-        CU  A      CUGACAG 
 .       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-10-P1d1-v1_5p
mirBase accessionMIMAT0002964
Sequence 
0- UACCCUGUAGAACCGAAUUUGU -22
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Star sequence

Tni-Mir-10-P1d1-v1_3p* (predicted)
mirBase accessionNone
Sequence 
40- AAGUACGUCUCUACAGGAAUA -61
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