MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-10-P1c1-v2

Family name MIR-10 (all species)
Seed CCCUGUA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-10c
Paralogues Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b1-v2  Tni-Mir-10-P1b2  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c2-v1  Tni-Mir-10-P1c2-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P1d1-v2  Tni-Mir-10-P2d1  Tni-Mir-10-P2d2  Tni-Mir-10-P3b2  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1c-v1  Aca-Mir-10-P1c-v2  Adi-Mir-10  Aga-Mir-10-P1-v1  Aga-Mir-10-P1-v2  Agr-Mir-10-P1  Ami-Mir-10-P1c-v1  Ami-Mir-10-P1c-v2  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Bta-Mir-10-P1c-v1  Bta-Mir-10-P1c-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1c-v1  Cfa-Mir-10-P1c-v2  Cja-Mir-10-P1c-v1  Cja-Mir-10-P1c-v2  Cli-Mir-10-P1c-v1  Cli-Mir-10-P1c-v2  Cmi-Mir-10-P1c-v1  Cmi-Mir-10-P1c-v2  Cpi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v2  Cpo-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dlo-Mir-10-P1-v2  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1c-v1  Dno-Mir-10-P1c-v2  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1c-v1  Eca-Mir-10-P1c-v2  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1c-v1  Ete-Mir-10-P1c-v2  Gga-Mir-10-P1c-v1  Gga-Mir-10-P1c-v2  Gja-Mir-10-P1c-v1  Gja-Mir-10-P1c-v2  Gmo-Mir-10-P1c1-v1  Gmo-Mir-10-P1c1-v2  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hru-Mir-10-P1  Hsa-Mir-10-P1c-v1  Hsa-Mir-10-P1c-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Laf-Mir-10-P1c-v1  Laf-Mir-10-P1c-v2  Lch-Mir-10-P1c  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1c-v1  Loc-Mir-10-P1c-v2  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c1-v2  Mdo-Mir-10-P1c-v1  Mdo-Mir-10-P1c-v2  Mgi-Mir-10-P1  Mml-Mir-10-P1c-v1  Mml-Mir-10-P1c-v2  Mmr-Mir-10-P1c-v1  Mmr-Mir-10-P1c-v2  Mmu-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v2  Mom-Mir-10-P1  Mun-Mir-10-P1c-v1  Mun-Mir-10-P1c-v2  Neu-Mir-10-P1c-v1  Neu-Mir-10-P1c-v2  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1c-v1  Oan-Mir-10-P1c-v2  Ocu-Mir-10-P1c-v1  Ocu-Mir-10-P1c-v2  Ofu-Mir-10-P1  Pab-Mir-10-P1c-v1  Pab-Mir-10-P1c-v2  Pau-Mir-10-P1  Pbv-Mir-10-P1c-v1  Pbv-Mir-10-P1c-v2  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1c-v1  Rno-Mir-10-P1c-v2  Rph-Mir-10-P1  Sha-Mir-10-P1c-v1  Sha-Mir-10-P1c-v2  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sto-Mir-10-P1c-v1  Sto-Mir-10-P1c-v2  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tgu-Mir-10-P1c-v1  Tgu-Mir-10-P1c-v2  War-Mir-10-P1  Xbo-Mir-10-P1  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1c-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 Un_random: 5507316-5507379 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1c1-v2)		 Mir-10-P1c1-v1 Un_random: 5507315-5507380 [-] UCSC Ensembl
Mir-10-P1c1-v2 Un_random: 5507316-5507379 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCUCCAGAGAGCCGCUGUCUUCUAUAUCUACCCUGUAGAUCCGGAUUUGUGUAACGAUCAUUAAAGCAAUCACAAAUUCGCUUCUAGGGGAGUAUAUAGUGGAUUUAUACACGACGGCAGCGA
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Structure
        10          20         30        40        50        60  
CCCUCCAGAGAGCCGCU--    U      -| A    G    UC          UAACGAUCA 
                   GUCU CUAUAU CU CCCU UAGA  CGGAUUUGUG         \
                   UAGG GAUAUA GA GGGG AUCU  GCUUAAACAC         U
AGCGACGGCAGCACAUAUU    U      U^ -    -    UC          UAACGAAAU 
  120       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-10-P1c1-v2_5p
mirBase accessionMIMAT0003088
Sequence 
0- ACCCUGUAGAUCCGGAUUUGUG -22
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Star sequence

Tni-Mir-10-P1c1-v2_3p*
mirBase accessionNone
Sequence 
42- ACAAAUUCGCUUCUAGGGGAGU -64
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