MirGeneDB 3.0

MirGeneDB ID

Hsa-Mir-10-P1c-v1

Family name MIR-10 (all species)
Seed ACCCUGU
Species Human (Homo sapiens)
MiRBase ID hsa-mir-10a
Paralogues Hsa-Mir-10-P1b-v1  Hsa-Mir-10-P1b-v2  Hsa-Mir-10-P1c-v2  Hsa-Mir-10-P2b  Hsa-Mir-10-P2c  Hsa-Mir-10-P2d  Hsa-Mir-10-P3b  Hsa-Mir-10-P3c  Hsa-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1c-v1  Aca-Mir-10-P1c-v2  Adi-Mir-10  Aga-Mir-10-P1-v1  Aga-Mir-10-P1-v2  Agr-Mir-10-P1  Ami-Mir-10-P1c-v1  Ami-Mir-10-P1c-v2  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Bta-Mir-10-P1c-v1  Bta-Mir-10-P1c-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1c-v1  Cfa-Mir-10-P1c-v2  Cja-Mir-10-P1c-v1  Cja-Mir-10-P1c-v2  Cli-Mir-10-P1c-v1  Cli-Mir-10-P1c-v2  Cmi-Mir-10-P1c-v1  Cmi-Mir-10-P1c-v2  Cpi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v2  Cpo-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dlo-Mir-10-P1-v2  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1c-v1  Dno-Mir-10-P1c-v2  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c1-v2  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1c2-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1c-v1  Eca-Mir-10-P1c-v2  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1c-v1  Ete-Mir-10-P1c-v2  Gga-Mir-10-P1c-v1  Gga-Mir-10-P1c-v2  Gja-Mir-10-P1c-v1  Gja-Mir-10-P1c-v2  Gmo-Mir-10-P1c1-v1  Gmo-Mir-10-P1c1-v2  Gmo-Mir-10-P1c2-v1  Gmo-Mir-10-P1c2-v2  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Laf-Mir-10-P1c-v1  Laf-Mir-10-P1c-v2  Lch-Mir-10-P1c  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1c-v1  Loc-Mir-10-P1c-v2  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c1-v2  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2a-v2  Mal-Mir-10-P1c2b-v1  Mal-Mir-10-P1c2b-v2  Mdo-Mir-10-P1c-v1  Mdo-Mir-10-P1c-v2  Mgi-Mir-10-P1  Mml-Mir-10-P1c-v1  Mml-Mir-10-P1c-v2  Mmr-Mir-10-P1c-v1  Mmr-Mir-10-P1c-v2  Mmu-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v2  Mom-Mir-10-P1  Mun-Mir-10-P1c-v1  Mun-Mir-10-P1c-v2  Neu-Mir-10-P1c-v1  Neu-Mir-10-P1c-v2  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1c-v1  Oan-Mir-10-P1c-v2  Ocu-Mir-10-P1c-v1  Ocu-Mir-10-P1c-v2  Ofu-Mir-10-P1  Pab-Mir-10-P1c-v1  Pab-Mir-10-P1c-v2  Pau-Mir-10-P1  Pbv-Mir-10-P1c-v1  Pbv-Mir-10-P1c-v2  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1c-v1  Rno-Mir-10-P1c-v2  Rph-Mir-10-P1  Sha-Mir-10-P1c-v1  Sha-Mir-10-P1c-v2  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sto-Mir-10-P1c-v1  Sto-Mir-10-P1c-v2  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tgu-Mir-10-P1c-v1  Tgu-Mir-10-P1c-v2  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c1-v2  Tni-Mir-10-P1c2-v1  Tni-Mir-10-P1c2-v2  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c3-v2  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1c4-v2  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1c-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(hg38)
chr17: 48579864-48579926 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1c-v1)
Mir-10-P1c-v1 chr17: 48579864-48579926 [-] UCSC Ensembl
Mir-10-P1c-v2 chr17: 48579865-48579925 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCAAGAAGAUCUGUCUGUCUUCUGUAUAUACCCUGUAGAUCCGAAUUUGUGUAAGGAAUUUUGUGGUCACAAAUUCGUAUCUAGGGGAAUAUGUAGUUGACAUAAACACUCCGCUCUUAUU
Get precursor sequence
Structure
        10          20        30        40        50        60 
GGCCAAGAAGAUCUGUC--|   UU        A    G     C         GUAAGGAA 
                   UGUC  CUGUAUAU CCCU UAGAU CGAAUUUGU        U
                   ACAG  GAUGUAUA GGGG AUCUA GCUUAAACA        U
UUAUUCUCGCCUCACAAAU^   UU        A    -     U         CUGGUGUU 
 120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Mature sequence

Hsa-Mir-10-P1c-v1_5p

mirBase accessionMIMAT0000253
Sequence
0- UACCCUGUAGAUCCGAAUUUGU -22
Get sequence
Proposed targets microrna.org: MIMAT0000253
TargetScanVert: hsa-miR-10a-5p
TargetMiner: hsa-miR-10a-5p
miRDB: MIMAT0000253
Star sequence

Hsa-Mir-10-P1c-v1_3p*

mirBase accessionMIMAT0004555
Sequence
42- AAAUUCGUAUCUAGGGGAAUA -63
Get sequence
Proposed targets microrna.org: MIMAT0004555
TargetScanVert: hsa-miR-10a-3p
TargetMiner: hsa-miR-10a-3p
miRDB: MIMAT0004555