Mir-10-P3b

MirGeneDB ID

Hsa-Mir-10-P3b

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-125a

Paralogues

Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Hsa-Mir-10-P1c-v1 Hsa-Mir-10-P1c-v2 Hsa-Mir-10-P2b Hsa-Mir-10-P2c Hsa-Mir-10-P2d Hsa-Mir-10-P3c Hsa-Mir-10-P3d

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3b Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3b Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3b Cfa-Mir-10-P3b Cin-Mir-10-P3 Cja-Mir-10-P3b Cpi-Mir-10-P3b Cpo-Mir-10-P3b Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3b Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3b Gja-Mir-10-P3b Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Isc-Mir-10-P3 Laf-Mir-10-P3b Lan-Mir-10-P3 Lch-Mir-10-P3b Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3b Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mgi-Mir-10-P3 Mml-Mir-10-P3b Mmr-Mir-10-P3b Mmu-Mir-10-P3b Mom-Mir-10-P3 Mun-Mir-10-P3b Nag-Mir-10-P3-v1 Nag-Mir-10-P3-v2 Nve-Mir-10 Oan-Mir-10-P3b Obi-Mir-10-P3 Ocu-Mir-10-P3b Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3b Pau-Mir-10-P3 Pbv-Mir-10-P3b Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3b Rph-Mir-10-P3 Sha-Mir-10-P3b Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3b Spu-Mir-10-P3 Sto-Mir-10-P3b Tca-Mir-10-P3 Tni-Mir-10-P3b2 War-Mir-10-P3 Xbo-Mir-10-P3 Xla-Mir-10-P3b Xtr-Mir-10-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(hg38)

chr19: 51693268-51693327 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3b)

Mir-10-P2b chr19: 51692618-51692677 [+] UCSC Ensembl
Let-7-P1b chr19: 51692793-51692859 [+] UCSC Ensembl
Mir-10-P3b chr19: 51693268-51693327 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACCGCACACCAUGUUGCCAGUCUCUAGGUCCCUGAGACCCUUUAACCUGUGAGGACAUCCAGGGUCACAGGUGAGGUUCUUGGGAGCCUGGCGUCUGGCCCAACCACACACCUGGGGA

Get precursor sequence

Structure

        10          20        30        40        50        60
CCACCGCACACCAUGUU--|    UCU     UC  UG   C    UA        GGACA 
                   GCCAG   CUAGG  CC  AGA CCUU  ACCUGUGA     U
                   CGGUC   GGUCC  GG  UCU GGAG  UGGACACU     C
AGGGGUCCACACACCAACC^    UGC     GA  GU   U    --        GGGAC 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-10-P3b_5p

mirBase accession

MIMAT0000443

Sequence

0- UCCCUGAGACCCUUUAACCUGUGA -24

Get sequence

Proposed targets

microrna.org: MIMAT0000443
TargetScanVert: hsa-miR-125a-5p
TargetMiner: hsa-miR-125a-5p
miRDB: MIMAT0000443

Star sequence

Hsa-Mir-10-P3b_3p*

mirBase accession

MIMAT0004602

Sequence

38- ACAGGUGAGGUUCUUGGGAGCC -60

Get sequence

Proposed targets

microrna.org: MIMAT0004602
TargetScanVert: hsa-miR-125a-3p
TargetMiner: hsa-miR-125a-3p
miRDB: MIMAT0004602