MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-10-P3b

Family name MIR-10 (all species)
Seed CCCUGAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-125a
Paralogues Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1b-v2  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1c-v2  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P1d-v2  Xtr-Mir-10-P2b  Xtr-Mir-10-P2c  Xtr-Mir-10-P3c  Xtr-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Ami-Mir-10-P3b  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cin-Mir-10-P3  Cja-Mir-10-P3b  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Eca-Mir-10-P3b  Egr-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Laf-Mir-10-P3b  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mgi-Mir-10-P3  Mml-Mir-10-P3b  Mmr-Mir-10-P3b  Mmu-Mir-10-P3b  Mom-Mir-10-P3  Mun-Mir-10-P3b  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pab-Mir-10-P3b  Pau-Mir-10-P3  Pbv-Mir-10-P3b  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rno-Mir-10-P3b  Rph-Mir-10-P3  Sha-Mir-10-P3b  Sko-Mir-10-P3  Snu-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Tni-Mir-10-P3b2  War-Mir-10-P3  Xbo-Mir-10-P3  Xla-Mir-10-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(xenTro9_add)		 chr7: 112726416-112726474 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3b)		 Mir-10-P2b chr7: 112711722-112711779 [+] UCSC Ensembl
Let-7-P1b chr7: 112714578-112714644 [+] UCSC Ensembl
Mir-10-P3b chr7: 112726416-112726474 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAGGUCCAAUUAAUGGUGUGAUGUUCUGUCCCUGAGACCCUUAACCUGUGAGGAAGACAUAUGUCACAGGUGAGGUUCUGAGGAGCUGGACGCCAUGCACAGACCGCACAAACAACA
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Structure
        10          20        30        40        50         
GUGAGGUCCAAUUAAUG--|    A     U UC   G   C     A       GGAAG 
                   GUGUG UGUUC G  CCU AGA CCUUA CCUGUGA     A
                   CGUAC GCAGG C  GGA UCU GGAGU GGACACU     C
ACAACAAACACGCCAGACA^    C     U GA   G   U     -       GUAUA 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-10-P3b_5p
mirBase accessionMIMAT0003684
Sequence 
0- UCCCUGAGACCCUUAACCUGUGA -23
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Proposed targets TargetScanVert: xtr-miR-125a
Star sequence

Xtr-Mir-10-P3b_3p*
mirBase accessionNone
Sequence 
37- ACAGGUGAGGUUCUGAGGAGCU -59
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