MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-10-P3b1

Family name MIR-10 (all species)
Seed CCCUGAG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-125a-2
Paralogues Gmo-Mir-10-P1b1-v1  Gmo-Mir-10-P1b1-v2  Gmo-Mir-10-P1b2-v1  Gmo-Mir-10-P1b2-v2  Gmo-Mir-10-P1c1-v1  Gmo-Mir-10-P1c1-v2  Gmo-Mir-10-P1c2-v1  Gmo-Mir-10-P1c2-v2  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P1d1-v2  Gmo-Mir-10-P2c2  Gmo-Mir-10-P2d1  Gmo-Mir-10-P2d2  Gmo-Mir-10-P3b2  Gmo-Mir-10-P3c2  Gmo-Mir-10-P3d1  Gmo-Mir-10-P3d2 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Ami-Mir-10-P3b  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cin-Mir-10-P3  Cja-Mir-10-P3b  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Eca-Mir-10-P3b  Egr-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Laf-Mir-10-P3b  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mgi-Mir-10-P3  Mml-Mir-10-P3b  Mmr-Mir-10-P3b  Mmu-Mir-10-P3b  Mom-Mir-10-P3  Mun-Mir-10-P3b  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pab-Mir-10-P3b  Pau-Mir-10-P3  Pbv-Mir-10-P3b  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rno-Mir-10-P3b  Rph-Mir-10-P3  Sha-Mir-10-P3b  Sko-Mir-10-P3  Snu-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  War-Mir-10-P3  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xtr-Mir-10-P3b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_2454: 123228-123283 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3b1)		 Mir-10-P3b1 GeneScaffold_2454: 123228-123283 [-] UCSC Ensembl
Let-7-P1b1 GeneScaffold_2454: 128932-129001 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUAUUGUGUUUCUCCAGUAUGCCCCUCUGUCCCUGAGACCCUUAACCUGUGAGGUUAAAGGUCACAGGUUAGGUCCUCGGGAACAGAGCUGCAUUCAGUUUCAACGCUUAAGGAA
Get precursor sequence
Structure
        10          20        30        40        50        
UUUAUUGUGUUUCUCCAGU--|   CC      C      AC   U         GGUU 
                     AUGC  CUCUGU CCUGAG  CCU AACCUGUGA    \
                     UACG  GAGACA GGGCUC  GGA UUGGACACU    A
AAGGAAUUCGCAACUUUGACU^   UC      A      CU   -         GGAA 
    110       100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-10-P3b1_5p
mirBase accessionMIMAT0044194
Sequence 
0- UCCCUGAGACCCUUAACCUGUGA -23
Get sequence
Star sequence

Gmo-Mir-10-P3b1_3p*
mirBase accessionNone
Sequence 
34- ACAGGUUAGGUCCUCGGGAACA -56
Get sequence