Let-7-P1b1

MirGeneDB ID

Gmo-Let-7-P1b1

Family name

LET-7 (all species)

Seed

GAGGUAG

Species

Cod (Gadus morhua)

MiRBase ID

gmo-let-7d-2

Paralogues

Gmo-Let-7-P1b2 Gmo-Let-7-P1c2 Gmo-Let-7-P1d1 Gmo-Let-7-P1d2 Gmo-Let-7-P2a1a Gmo-Let-7-P2a2a Gmo-Let-7-P2a3a Gmo-Let-7-P2a3b Gmo-Let-7-P2a4a Gmo-Let-7-P2a4b Gmo-Let-7-P2b1a Gmo-Let-7-P2b2a Gmo-Let-7-P2b3a Gmo-Let-7-P2b3b Gmo-Let-7-P2b4a Gmo-Let-7-P2b4b Gmo-Let-7-P2c2a Gmo-Let-7-P2c2b Gmo-Let-7-P2c3

Orthologues

Aae-Let-7 Aca-Let-7-P1b Aga-Let-7 Agr-Let-7 Ami-Let-7-P1b Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P1b Cfa-Let-7-P1b Cin-Let-7-P1 Cja-Let-7-P1b Cpi-Let-7-P1b Cpo-Let-7-P1b Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dpu-Let-7 Dre-Let-7-P1b1 Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P1b Egr-Let-7 Esc-Let-7 Ete-Let-7-P1b Gja-Let-7-P1b Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P1b Isc-Let-7 Laf-Let-7-P1b Lan-Let-7 Lch-Let-7-P1b Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P1b Mal-Let-7-P1b1 Mdo-Let-7-P1b Mgi-Let-7 Mml-Let-7-P1b Mmr-Let-7-P1b Mmu-Let-7-P1b Mom-Let-7 Mun-Let-7-P1b Npo-Let-7 Oan-Let-7-P1b Obi-Let-7 Ocu-Let-7-P1b Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P1b Pau-Let-7 Pbv-Let-7-P1b Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P1b Rph-Let-7 Sha-Let-7-P1b Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P1b Spu-Let-7 Sro-Let-7 Sto-Let-7-P1b Tca-Let-7 Tni-Let-7-P1b1 Tur-Let-7 War-Let-7 Xbo-Let-7 Xtr-Let-7-P1b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_2454: 128932-129001 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Let-7-P1b1)

Mir-10-P3b1 GeneScaffold_2454: 123228-123283 [-] UCSC Ensembl
Let-7-P1b1 GeneScaffold_2454: 128932-129001 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCGCAGCCGGUCCUCUGUGCUCUGCAGAGUGAGGUAGUUGGUUGUAUGGUUUGGCGUAAUAAUCAGCCGGGAGAUAACUGUACAGCUCUCUAGCUUCCCCUGCGGAGUCACCUCACGCCACCCCGGCCC

Get precursor sequence

Structure

        10         20         30        40        50        60    
AGCGCAGCCGGUCCUCU-   -|       AGU   G   UU            UGGCGUAAUAA 
                  GUG CUCUGCAG   GAG UAG  GGUUGUAUGGUU           U
                  CAC GAGGCGUC   UUC AUC  UCGACAUGUCAA           C
CCCGGCCCCACCGCACUC   U^       CCC   G   UC            UAGAGGGCCGA 
.       120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Let-7-P1b1_5p

mirBase accession

MIMAT0044195

Sequence

0- UGAGGUAGUUGGUUGUAUGGUU -22

Get sequence

Star sequence

Gmo-Let-7-P1b1_3p*

mirBase accession

None

Sequence

48- CUGUACAGCUCUCUAGCUUCCC -70

Get sequence